Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1943 and GFF1944 are separated by 113 nucleotides GFF1944 and GFF1945 are separated by 24 nucleotides
GFF1943 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 635,793 to 638,579
GFF1943
GFF1944 - hypothetical protein, at 638,693 to 639,622
GFF1944
GFF1945 - FIG01003589: hypothetical protein, at 639,647 to 640,846
GFF1945
Position (kb) 638
639
640 Strain fitness (log2 ratio) -1
0
1
2 at 637.822 kb on - strand, within GFF1943 at 637.967 kb on + strand, within GFF1943 at 638.049 kb on + strand, within GFF1943 at 638.172 kb on + strand, within GFF1943 at 638.190 kb on + strand, within GFF1943 at 638.247 kb on + strand, within GFF1943 at 638.247 kb on + strand, within GFF1943 at 638.247 kb on + strand, within GFF1943 at 638.323 kb on - strand at 638.331 kb on + strand at 638.430 kb on + strand at 638.430 kb on + strand at 638.430 kb on + strand at 638.431 kb on - strand at 638.493 kb on + strand at 638.494 kb on - strand at 638.494 kb on - strand at 638.646 kb on + strand at 638.711 kb on + strand at 638.712 kb on - strand at 638.715 kb on + strand at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.120 kb on - strand, within GFF1944 at 639.180 kb on - strand, within GFF1944 at 639.524 kb on + strand, within GFF1944 at 639.524 kb on + strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.539 kb on + strand at 639.548 kb on + strand at 639.548 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.555 kb on - strand at 639.576 kb on + strand at 639.576 kb on + strand at 639.577 kb on - strand at 639.898 kb on - strand, within GFF1945 at 639.898 kb on - strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.934 kb on - strand, within GFF1945 at 639.934 kb on - strand, within GFF1945 at 640.134 kb on + strand, within GFF1945 at 640.308 kb on + strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.317 kb on + strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 637,822 - GFF1943 0.73 -0.8 637,967 + GFF1943 0.78 -0.1 638,049 + GFF1943 0.81 +0.2 638,172 + GFF1943 0.85 -0.0 638,190 + GFF1943 0.86 -0.4 638,247 + GFF1943 0.88 -0.4 638,247 + GFF1943 0.88 -1.5 638,247 + GFF1943 0.88 -0.3 638,323 - +0.7 638,331 + +0.5 638,430 + +0.0 638,430 + +0.2 638,430 + +0.2 638,431 - -0.0 638,493 + +0.4 638,494 - -0.1 638,494 - -0.3 638,646 + -0.3 638,711 + -0.2 638,712 - +0.1 638,715 + -0.1 639,119 + GFF1944 0.46 -0.3 639,119 + GFF1944 0.46 +0.2 639,119 + GFF1944 0.46 +0.1 639,119 + GFF1944 0.46 +0.7 639,120 - GFF1944 0.46 +0.8 639,180 - GFF1944 0.52 +0.5 639,524 + GFF1944 0.89 -1.1 639,524 + GFF1944 0.89 +0.3 639,525 - GFF1944 0.89 -0.2 639,525 - GFF1944 0.89 +0.0 639,525 - GFF1944 0.89 +1.8 639,539 + -0.6 639,548 + -0.1 639,548 + +0.6 639,554 + +1.0 639,554 + +0.3 639,554 + +1.1 639,554 + +0.1 639,554 + +0.1 639,555 - -0.5 639,576 + -0.8 639,576 + -0.4 639,577 - -0.8 639,898 - GFF1945 0.21 -0.3 639,898 - GFF1945 0.21 -0.7 639,933 + GFF1945 0.24 +0.5 639,933 + GFF1945 0.24 -0.2 639,933 + GFF1945 0.24 +0.6 639,933 + GFF1945 0.24 +0.7 639,934 - GFF1945 0.24 -0.2 639,934 - GFF1945 0.24 -1.3 640,134 + GFF1945 0.41 +0.8 640,308 + GFF1945 0.55 -0.2 640,309 - GFF1945 0.55 -0.5 640,309 - GFF1945 0.55 +0.4 640,309 - GFF1945 0.55 -0.6 640,317 + GFF1945 0.56 -0.3 640,318 - GFF1945 0.56 +0.7 640,318 - GFF1945 0.56 +0.9 640,318 - GFF1945 0.56 -0.1 640,555 - GFF1945 0.76 -0.3 640,555 - GFF1945 0.76 +0.1
Or see this region's nucleotide sequence