Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF193 and GFF194 are separated by 35 nucleotides GFF194 and GFF195 are separated by 0 nucleotides GFF195 and GFF196 are separated by 105 nucleotides GFF196 and GFF197 are separated by 26 nucleotides
GFF193 - Two-component sensor PilS, at 222,064 to 223,569
GFF193
GFF194 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 223,605 to 224,699
GFF194
GFF195 - RidA/YER057c/UK114 superfamily, group 1, at 224,700 to 225,191
GFF195
GFF196 - Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-), at 225,297 to 225,617
GFF196
GFF197 - BUG/TctC family periplasmic protein, at 225,644 to 226,612
GFF197
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.127 kb on + strand, within GFF193 at 223.127 kb on + strand, within GFF193 at 223.127 kb on + strand, within GFF193 at 223.127 kb on + strand, within GFF193 at 223.128 kb on - strand, within GFF193 at 223.128 kb on - strand, within GFF193 at 223.128 kb on - strand, within GFF193 at 223.128 kb on - strand, within GFF193 at 223.138 kb on + strand, within GFF193 at 223.139 kb on - strand, within GFF193 at 223.160 kb on + strand, within GFF193 at 223.403 kb on + strand, within GFF193 at 223.404 kb on - strand, within GFF193 at 223.404 kb on - strand, within GFF193 at 223.404 kb on - strand, within GFF193 at 223.642 kb on + strand at 223.642 kb on + strand at 223.642 kb on + strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.774 kb on + strand, within GFF194 at 223.775 kb on - strand, within GFF194 at 223.775 kb on - strand, within GFF194 at 223.830 kb on + strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.867 kb on - strand, within GFF194 at 223.954 kb on - strand, within GFF194 at 223.977 kb on + strand, within GFF194 at 223.977 kb on + strand, within GFF194 at 224.494 kb on - strand, within GFF194 at 224.514 kb on + strand, within GFF194 at 224.515 kb on - strand, within GFF194 at 224.515 kb on - strand, within GFF194 at 224.767 kb on + strand, within GFF195 at 224.767 kb on + strand, within GFF195 at 224.767 kb on + strand, within GFF195 at 224.768 kb on - strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.191 kb on + strand at 225.191 kb on + strand at 225.191 kb on + strand at 225.191 kb on + strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.247 kb on + strand at 225.247 kb on + strand at 225.248 kb on - strand at 225.248 kb on - strand at 225.346 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.480 kb on - strand, within GFF196 at 225.520 kb on + strand, within GFF196
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 223,127 + GFF193 0.71 -0.1 223,127 + GFF193 0.71 -0.3 223,127 + GFF193 0.71 -1.9 223,127 + GFF193 0.71 +0.4 223,128 - GFF193 0.71 -1.0 223,128 - GFF193 0.71 +0.2 223,128 - GFF193 0.71 +0.7 223,128 - GFF193 0.71 -0.7 223,138 + GFF193 0.71 -0.8 223,139 - GFF193 0.71 +0.0 223,160 + GFF193 0.73 +0.4 223,403 + GFF193 0.89 -0.1 223,404 - GFF193 0.89 -0.1 223,404 - GFF193 0.89 -0.4 223,404 - GFF193 0.89 +1.4 223,642 + +0.1 223,642 + -0.1 223,642 + -0.0 223,643 - +0.7 223,643 - +1.9 223,774 + GFF194 0.15 -1.5 223,775 - GFF194 0.16 -0.9 223,775 - GFF194 0.16 -1.5 223,830 + GFF194 0.21 -0.2 223,831 - GFF194 0.21 +1.3 223,831 - GFF194 0.21 -0.9 223,831 - GFF194 0.21 +0.9 223,867 - GFF194 0.24 -0.1 223,954 - GFF194 0.32 -0.6 223,977 + GFF194 0.34 -0.9 223,977 + GFF194 0.34 +0.4 224,494 - GFF194 0.81 -0.3 224,514 + GFF194 0.83 +0.3 224,515 - GFF194 0.83 -1.0 224,515 - GFF194 0.83 +0.1 224,767 + GFF195 0.14 +0.9 224,767 + GFF195 0.14 +0.5 224,767 + GFF195 0.14 -0.1 224,768 - GFF195 0.14 -0.0 225,067 + GFF195 0.75 -0.8 225,067 + GFF195 0.75 -0.4 225,067 + GFF195 0.75 -0.2 225,067 + GFF195 0.75 +0.3 225,067 + GFF195 0.75 -1.1 225,068 - GFF195 0.75 -0.2 225,068 - GFF195 0.75 -0.8 225,068 - GFF195 0.75 -0.5 225,068 - GFF195 0.75 -0.5 225,100 + GFF195 0.81 +0.5 225,100 + GFF195 0.81 -0.5 225,100 + GFF195 0.81 -0.6 225,100 + GFF195 0.81 -0.1 225,101 - GFF195 0.82 -0.2 225,101 - GFF195 0.82 -1.8 225,101 - GFF195 0.82 -0.0 225,101 - GFF195 0.82 -1.5 225,191 + -0.6 225,191 + -1.7 225,191 + +0.6 225,191 + -0.6 225,192 - -1.3 225,192 - -0.3 225,192 - +0.1 225,192 - -0.2 225,192 - -0.9 225,247 + +0.4 225,247 + -0.2 225,248 - -2.3 225,248 - +1.9 225,346 + GFF196 0.15 -0.6 225,479 + GFF196 0.57 -0.6 225,479 + GFF196 0.57 -0.0 225,479 + GFF196 0.57 -0.5 225,480 - GFF196 0.57 -0.8 225,520 + GFF196 0.69 +0.6
Or see this region's nucleotide sequence