Strain Fitness in Variovorax sp. SCN45 around GFF1859

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1857 and GFF1858 overlap by 4 nucleotidesGFF1858 and GFF1859 overlap by 4 nucleotidesGFF1859 and GFF1860 are separated by 12 nucleotidesGFF1860 and GFF1861 are separated by 172 nucleotides GFF1857 - FIG00553873: hypothetical protein, at 531,838 to 533,118 GFF1857 GFF1858 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 533,115 to 533,879 GFF1858 GFF1859 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 533,876 to 534,547 GFF1859 GFF1860 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 534,560 to 535,327 GFF1860 GFF1861 - Transcriptional regulator, IclR family, at 535,500 to 536,324 GFF1861 Position (kb) 533 534 535Strain fitness (log2 ratio) -1 0 1 2 3at 533.722 kb on + strand, within GFF1858at 533.928 kb on + strandat 533.928 kb on + strandat 533.928 kb on + strandat 533.928 kb on + strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.955 kb on + strand, within GFF1859at 533.955 kb on + strand, within GFF1859at 533.955 kb on + strand, within GFF1859at 533.956 kb on - strand, within GFF1859at 533.956 kb on - strand, within GFF1859at 533.956 kb on - strand, within GFF1859at 533.956 kb on - strand, within GFF1859at 533.976 kb on + strand, within GFF1859at 533.976 kb on + strand, within GFF1859at 533.977 kb on - strand, within GFF1859at 534.097 kb on - strand, within GFF1859at 534.097 kb on - strand, within GFF1859at 534.132 kb on - strand, within GFF1859at 534.132 kb on - strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.318 kb on + strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.319 kb on - strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.324 kb on + strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.325 kb on - strand, within GFF1859at 534.699 kb on + strand, within GFF1860at 534.699 kb on + strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.747 kb on + strand, within GFF1860at 534.747 kb on + strand, within GFF1860at 534.748 kb on - strand, within GFF1860at 534.748 kb on - strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.829 kb on - strand, within GFF1860at 534.829 kb on - strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.934 kb on - strand, within GFF1860at 534.975 kb on + strand, within GFF1860at 534.975 kb on + strand, within GFF1860at 534.976 kb on - strand, within GFF1860at 534.981 kb on + strand, within GFF1860at 534.982 kb on - strand, within GFF1860at 534.982 kb on - strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.507 kb on + strandat 535.507 kb on + strandat 535.508 kb on - strandat 535.508 kb on - strandat 535.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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533,722 + GFF1858 0.79 -0.2
533,928 + +0.0
533,928 + +0.1
533,928 + -0.8
533,928 + -0.1
533,929 - -0.2
533,929 - +2.2
533,929 - -0.1
533,955 + GFF1859 0.12 +0.4
533,955 + GFF1859 0.12 +0.7
533,955 + GFF1859 0.12 -0.1
533,956 - GFF1859 0.12 -0.5
533,956 - GFF1859 0.12 +0.2
533,956 - GFF1859 0.12 -0.6
533,956 - GFF1859 0.12 +0.1
533,976 + GFF1859 0.15 -0.6
533,976 + GFF1859 0.15 +0.0
533,977 - GFF1859 0.15 +0.6
534,097 - GFF1859 0.33 +0.7
534,097 - GFF1859 0.33 -0.5
534,132 - GFF1859 0.38 +0.4
534,132 - GFF1859 0.38 +0.8
534,318 + GFF1859 0.66 +0.3
534,318 + GFF1859 0.66 +1.8
534,318 + GFF1859 0.66 +3.4
534,318 + GFF1859 0.66 -0.6
534,318 + GFF1859 0.66 -1.0
534,318 + GFF1859 0.66 -0.6
534,319 - GFF1859 0.66 -1.5
534,319 - GFF1859 0.66 +1.8
534,319 - GFF1859 0.66 +0.6
534,319 - GFF1859 0.66 +0.4
534,319 - GFF1859 0.66 +0.4
534,319 - GFF1859 0.66 -1.0
534,324 + GFF1859 0.67 -0.3
534,324 + GFF1859 0.67 -0.5
534,324 + GFF1859 0.67 +1.0
534,324 + GFF1859 0.67 -1.4
534,324 + GFF1859 0.67 +0.7
534,324 + GFF1859 0.67 -0.2
534,324 + GFF1859 0.67 -0.6
534,324 + GFF1859 0.67 +0.3
534,325 - GFF1859 0.67 +0.1
534,325 - GFF1859 0.67 -0.2
534,325 - GFF1859 0.67 +1.2
534,325 - GFF1859 0.67 -0.0
534,325 - GFF1859 0.67 +0.5
534,325 - GFF1859 0.67 -1.3
534,325 - GFF1859 0.67 +1.0
534,699 + GFF1860 0.18 +0.3
534,699 + GFF1860 0.18 -1.0
534,700 - GFF1860 0.18 -0.6
534,700 - GFF1860 0.18 -1.2
534,700 - GFF1860 0.18 +0.2
534,700 - GFF1860 0.18 -0.7
534,700 - GFF1860 0.18 -0.0
534,700 - GFF1860 0.18 +0.1
534,700 - GFF1860 0.18 +0.8
534,700 - GFF1860 0.18 -0.0
534,700 - GFF1860 0.18 -0.1
534,747 + GFF1860 0.24 +0.0
534,747 + GFF1860 0.24 +0.1
534,748 - GFF1860 0.24 -0.7
534,748 - GFF1860 0.24 -0.6
534,828 + GFF1860 0.35 -1.1
534,828 + GFF1860 0.35 -0.2
534,828 + GFF1860 0.35 +0.5
534,828 + GFF1860 0.35 +0.8
534,828 + GFF1860 0.35 +0.2
534,829 - GFF1860 0.35 +0.6
534,829 - GFF1860 0.35 -0.5
534,933 + GFF1860 0.49 -0.0
534,933 + GFF1860 0.49 -0.5
534,933 + GFF1860 0.49 -0.2
534,933 + GFF1860 0.49 -0.5
534,933 + GFF1860 0.49 -0.2
534,934 - GFF1860 0.49 -1.0
534,975 + GFF1860 0.54 +0.5
534,975 + GFF1860 0.54 +0.5
534,976 - GFF1860 0.54 +0.1
534,981 + GFF1860 0.55 +0.2
534,982 - GFF1860 0.55 +0.2
534,982 - GFF1860 0.55 -1.3
535,230 + GFF1860 0.87 +0.1
535,230 + GFF1860 0.87 +0.3
535,230 + GFF1860 0.87 -0.6
535,231 - GFF1860 0.87 -0.5
535,231 - GFF1860 0.87 -0.4
535,231 - GFF1860 0.87 -0.2
535,507 + -0.3
535,507 + -0.4
535,508 - +0.0
535,508 - -0.2
535,510 - -0.5

Or see this region's nucleotide sequence