Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1849 and GFF1850 are separated by 88 nucleotides GFF1850 and GFF1851 overlap by 8 nucleotides GFF1851 and GFF1852 are separated by 23 nucleotides
GFF1849 - FIG00347667: hypothetical protein, at 523,910 to 524,701
GFF1849
GFF1850 - Tetracenomycin polyketide synthesis O-methyltransferase TcmP, at 524,790 to 525,548
GFF1850
GFF1851 - TOMM biosynthesis cyclodehydratase (protein C) / TOMM biosynthesis docking scaffold (protein D), at 525,541 to 527,778
GFF1851
GFF1852 - FHA domain protein, at 527,802 to 528,740
GFF1852
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 524.612 kb on + strand, within GFF1849 at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.684 kb on + strand at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.869 kb on - strand, within GFF1850 at 524.869 kb on - strand, within GFF1850 at 525.210 kb on + strand, within GFF1850 at 525.210 kb on + strand, within GFF1850 at 525.211 kb on - strand, within GFF1850 at 525.211 kb on - strand, within GFF1850 at 525.416 kb on + strand, within GFF1850 at 525.418 kb on + strand, within GFF1850 at 525.418 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.504 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 526.027 kb on + strand, within GFF1851 at 526.027 kb on + strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.793 kb on - strand, within GFF1851 at 526.793 kb on - strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.161 kb on + strand, within GFF1851 at 527.161 kb on + strand, within GFF1851 at 527.162 kb on - strand, within GFF1851 at 527.307 kb on - strand, within GFF1851 at 527.699 kb on - strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.911 kb on + strand, within GFF1852 at 527.911 kb on + strand, within GFF1852 at 527.911 kb on + strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.625 kb on + strand, within GFF1852 at 528.625 kb on + strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.703 kb on - strand at 528.738 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.774 kb on + strand at 528.774 kb on + strand at 528.775 kb on - strand at 528.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 524,612 + GFF1849 0.89 +0.7 524,663 + -0.5 524,663 + -1.1 524,663 + -0.6 524,663 + -0.3 524,663 + -0.8 524,663 + +0.3 524,663 + -0.1 524,664 - -0.5 524,664 - +0.5 524,664 - +0.2 524,664 - -1.0 524,664 - -0.7 524,684 + +0.3 524,868 + GFF1850 0.10 -0.0 524,868 + GFF1850 0.10 -0.4 524,868 + GFF1850 0.10 +2.8 524,868 + GFF1850 0.10 +0.2 524,868 + GFF1850 0.10 +0.8 524,868 + GFF1850 0.10 -0.4 524,868 + GFF1850 0.10 +0.1 524,868 + GFF1850 0.10 +0.5 524,869 - GFF1850 0.10 -0.1 524,869 - GFF1850 0.10 -0.1 525,210 + GFF1850 0.55 -0.2 525,210 + GFF1850 0.55 +0.2 525,211 - GFF1850 0.55 -0.9 525,211 - GFF1850 0.55 -0.6 525,416 + GFF1850 0.82 +0.0 525,418 + GFF1850 0.83 +4.4 525,418 + GFF1850 0.83 -0.1 525,435 + GFF1850 0.85 -0.9 525,435 + GFF1850 0.85 -0.2 525,435 + GFF1850 0.85 -0.2 525,436 - GFF1850 0.85 +0.1 525,436 - GFF1850 0.85 +0.6 525,436 - GFF1850 0.85 +0.2 525,436 - GFF1850 0.85 -1.0 525,436 - GFF1850 0.85 +0.2 525,436 - GFF1850 0.85 +0.2 525,504 + -0.5 525,724 + +1.4 525,724 + -0.7 525,724 + -1.0 525,724 + -0.1 525,724 + -0.4 525,724 + -0.7 525,724 + +0.6 525,725 - -0.6 525,725 - +0.7 525,725 - -0.9 525,725 - -0.5 525,725 - +0.6 525,725 - -0.3 525,835 + GFF1851 0.13 -0.7 525,835 + GFF1851 0.13 -0.1 525,835 + GFF1851 0.13 -0.8 525,835 + GFF1851 0.13 +0.1 525,835 + GFF1851 0.13 +0.8 525,836 - GFF1851 0.13 -0.1 525,836 - GFF1851 0.13 +1.5 525,836 - GFF1851 0.13 +0.0 525,836 - GFF1851 0.13 -0.5 525,836 - GFF1851 0.13 +0.0 526,027 + GFF1851 0.22 -1.1 526,027 + GFF1851 0.22 -0.8 526,028 - GFF1851 0.22 +1.5 526,028 - GFF1851 0.22 +1.8 526,028 - GFF1851 0.22 -0.9 526,792 + GFF1851 0.56 -0.6 526,792 + GFF1851 0.56 -0.9 526,792 + GFF1851 0.56 +0.6 526,792 + GFF1851 0.56 +0.1 526,792 + GFF1851 0.56 -0.4 526,792 + GFF1851 0.56 +0.1 526,792 + GFF1851 0.56 +0.8 526,792 + GFF1851 0.56 -0.9 526,792 + GFF1851 0.56 -0.6 526,793 - GFF1851 0.56 -0.4 526,793 - GFF1851 0.56 -0.5 527,050 + GFF1851 0.67 -0.5 527,050 + GFF1851 0.67 -0.3 527,050 + GFF1851 0.67 -0.0 527,051 - GFF1851 0.67 -0.1 527,051 - GFF1851 0.67 +0.2 527,051 - GFF1851 0.67 -1.6 527,091 + GFF1851 0.69 +0.1 527,091 + GFF1851 0.69 -0.4 527,091 + GFF1851 0.69 -0.7 527,161 + GFF1851 0.72 -1.1 527,161 + GFF1851 0.72 -0.7 527,162 - GFF1851 0.72 -0.4 527,307 - GFF1851 0.79 -0.5 527,699 - -0.1 527,770 + -0.5 527,770 + -0.2 527,770 + -0.0 527,770 + +0.1 527,770 + -0.5 527,770 + +0.2 527,770 + +2.0 527,771 - -0.6 527,771 - -0.6 527,771 - -0.4 527,771 - +0.5 527,771 - +0.7 527,771 - -0.2 527,771 - +0.4 527,794 + -1.5 527,794 + +0.2 527,794 + +0.2 527,794 + -0.1 527,794 + -0.6 527,794 + -1.1 527,794 + -0.1 527,794 + -0.1 527,794 + +0.5 527,795 - -0.2 527,795 - +0.2 527,795 - +0.1 527,795 - -0.1 527,795 - +0.8 527,801 + +0.1 527,801 + -0.5 527,801 + -0.0 527,801 + -0.4 527,801 + -0.5 527,801 + +0.1 527,801 + -0.1 527,801 + -0.1 527,802 - -2.2 527,802 - -0.7 527,802 - -1.2 527,802 - +0.0 527,802 - +0.6 527,802 - -1.1 527,911 + GFF1852 0.12 -0.6 527,911 + GFF1852 0.12 -1.8 527,911 + GFF1852 0.12 +0.2 527,912 - GFF1852 0.12 +0.8 527,912 - GFF1852 0.12 -1.1 527,912 - GFF1852 0.12 -0.4 527,912 - GFF1852 0.12 -0.5 527,912 - GFF1852 0.12 +0.5 527,912 - GFF1852 0.12 -1.3 527,912 - GFF1852 0.12 +1.7 527,912 - GFF1852 0.12 -0.3 527,912 - GFF1852 0.12 -0.6 528,201 + GFF1852 0.42 -0.5 528,201 + GFF1852 0.42 +0.7 528,201 + GFF1852 0.42 -0.3 528,201 + GFF1852 0.42 -0.2 528,201 + GFF1852 0.42 +0.2 528,201 + GFF1852 0.42 +1.2 528,201 + GFF1852 0.42 -1.0 528,201 + GFF1852 0.42 +0.1 528,201 + GFF1852 0.42 +0.8 528,202 - GFF1852 0.43 -0.6 528,202 - GFF1852 0.43 -1.9 528,202 - GFF1852 0.43 +0.1 528,202 - GFF1852 0.43 +0.7 528,202 - GFF1852 0.43 -0.1 528,468 + GFF1852 0.71 -0.1 528,468 + GFF1852 0.71 -0.1 528,468 + GFF1852 0.71 -0.8 528,468 + GFF1852 0.71 -0.2 528,468 + GFF1852 0.71 -0.7 528,468 + GFF1852 0.71 -0.1 528,468 + GFF1852 0.71 -0.5 528,468 + GFF1852 0.71 -0.6 528,468 + GFF1852 0.71 -1.5 528,469 - GFF1852 0.71 -0.4 528,469 - GFF1852 0.71 -0.7 528,469 - GFF1852 0.71 +0.3 528,469 - GFF1852 0.71 -0.3 528,469 - GFF1852 0.71 -0.5 528,469 - GFF1852 0.71 -0.7 528,469 - GFF1852 0.71 -0.4 528,469 - GFF1852 0.71 +0.2 528,588 + GFF1852 0.84 -0.4 528,588 + GFF1852 0.84 -1.3 528,588 + GFF1852 0.84 +0.7 528,588 + GFF1852 0.84 -0.3 528,589 - GFF1852 0.84 +0.2 528,589 - GFF1852 0.84 -0.5 528,589 - GFF1852 0.84 +0.5 528,589 - GFF1852 0.84 -2.2 528,589 - GFF1852 0.84 +0.5 528,589 - GFF1852 0.84 -0.5 528,589 - GFF1852 0.84 -0.8 528,589 - GFF1852 0.84 +0.0 528,625 + GFF1852 0.88 -0.0 528,625 + GFF1852 0.88 -0.0 528,626 - GFF1852 0.88 -0.2 528,626 - GFF1852 0.88 -0.5 528,626 - GFF1852 0.88 -0.2 528,703 - +0.4 528,738 + -1.3 528,748 + +0.6 528,748 + -0.5 528,748 + -1.1 528,748 + +0.0 528,749 - -1.2 528,774 + -0.8 528,774 + -0.8 528,775 - -0.3 528,775 - -0.1
Or see this region's nucleotide sequence