Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1830 and GFF1831 overlap by 4 nucleotides GFF1831 and GFF1832 are separated by 80 nucleotides GFF1832 and GFF1833 are separated by 37 nucleotides
GFF1830 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 495,556 to 496,857
GFF1830
GFF1831 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 496,854 to 497,354
GFF1831
GFF1832 - TRAP transporter solute receptor, unknown substrate 3, at 497,435 to 498,490
GFF1832
GFF1833 - (S)-mandelate dehydrogenase (EC 1.1.99.31), at 498,528 to 499,778
GFF1833
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 496.745 kb on + strand at 496.751 kb on + strand at 496.806 kb on + strand at 496.810 kb on + strand at 496.811 kb on - strand at 496.811 kb on - strand at 496.811 kb on - strand at 496.975 kb on + strand, within GFF1831 at 496.975 kb on + strand, within GFF1831 at 496.976 kb on - strand, within GFF1831 at 496.976 kb on - strand, within GFF1831 at 497.005 kb on + strand, within GFF1831 at 497.173 kb on + strand, within GFF1831 at 497.357 kb on - strand at 497.451 kb on + strand at 497.589 kb on + strand, within GFF1832 at 497.590 kb on - strand, within GFF1832 at 497.730 kb on + strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.791 kb on - strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 498.072 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.266 kb on + strand, within GFF1832 at 498.529 kb on + strand at 498.529 kb on + strand at 498.529 kb on + strand at 498.550 kb on + strand at 499.387 kb on + strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833 at 499.388 kb on - strand, within GFF1833
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 496,745 + -0.2 496,751 + -1.3 496,806 + -0.3 496,810 + -1.0 496,811 - -0.6 496,811 - -0.5 496,811 - +1.1 496,975 + GFF1831 0.24 -0.4 496,975 + GFF1831 0.24 -1.6 496,976 - GFF1831 0.24 -0.2 496,976 - GFF1831 0.24 +0.0 497,005 + GFF1831 0.30 +0.2 497,173 + GFF1831 0.64 +0.2 497,357 - -0.3 497,451 + +0.6 497,589 + GFF1832 0.15 +0.8 497,590 - GFF1832 0.15 +0.5 497,730 + GFF1832 0.28 +1.1 497,731 - GFF1832 0.28 -0.8 497,731 - GFF1832 0.28 -0.1 497,731 - GFF1832 0.28 -0.7 497,769 + GFF1832 0.32 +0.8 497,769 + GFF1832 0.32 -0.3 497,770 - GFF1832 0.32 -0.1 497,770 - GFF1832 0.32 -0.1 497,791 - GFF1832 0.34 -1.2 497,900 + GFF1832 0.44 +0.1 497,900 + GFF1832 0.44 +0.5 497,900 + GFF1832 0.44 -0.4 497,901 - GFF1832 0.44 +4.6 497,901 - GFF1832 0.44 +0.1 498,072 + GFF1832 0.60 -1.8 498,189 + GFF1832 0.71 -0.5 498,189 + GFF1832 0.71 +0.1 498,266 + GFF1832 0.79 -0.6 498,529 + +0.6 498,529 + -1.1 498,529 + +0.3 498,550 + -0.4 499,387 + GFF1833 0.69 -0.2 499,388 - GFF1833 0.69 +0.4 499,388 - GFF1833 0.69 -1.6 499,388 - GFF1833 0.69 +2.0 499,388 - GFF1833 0.69 -0.3
Or see this region's nucleotide sequence