Strain Fitness in Variovorax sp. SCN45 around GFF1811

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1810 and GFF1811 are separated by 184 nucleotidesGFF1811 and GFF1812 overlap by 4 nucleotidesGFF1812 and GFF1813 are separated by 36 nucleotides GFF1810 - Histidinol phosphatase and related hydrolases of the PHP family, at 472,885 to 474,567 GFF1810 GFF1811 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 474,752 to 476,101 GFF1811 GFF1812 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 476,098 to 476,751 GFF1812 GFF1813 - Acetylornithine deacetylase-like protein Acry_1162, at 476,788 to 478,014 GFF1813 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -2 -1 0 1 2at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.819 kb on + strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.820 kb on - strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.858 kb on + strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.859 kb on - strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.873 kb on + strand, within GFF1810at 473.874 kb on - strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.002 kb on + strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.003 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.129 kb on - strand, within GFF1810at 474.170 kb on + strand, within GFF1810at 474.170 kb on + strand, within GFF1810at 474.171 kb on - strand, within GFF1810at 474.171 kb on - strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.230 kb on + strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.231 kb on - strand, within GFF1810at 474.733 kb on + strandat 474.733 kb on + strandat 474.733 kb on + strandat 474.733 kb on + strandat 474.734 kb on - strandat 474.735 kb on + strandat 474.735 kb on + strandat 474.735 kb on + strandat 474.736 kb on - strandat 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.983 kb on + strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 474.984 kb on - strand, within GFF1811at 475.148 kb on + strand, within GFF1811at 475.149 kb on - strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.172 kb on + strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.173 kb on - strand, within GFF1811at 475.214 kb on + strand, within GFF1811at 475.214 kb on + strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.215 kb on - strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.289 kb on + strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.290 kb on - strand, within GFF1811at 475.337 kb on + strand, within GFF1811at 475.338 kb on - strand, within GFF1811at 475.338 kb on - strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.745 kb on + strand, within GFF1811at 475.746 kb on - strand, within GFF1811at 475.746 kb on - strand, within GFF1811at 475.826 kb on + strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 475.917 kb on - strand, within GFF1811at 476.048 kb on + strandat 476.048 kb on + strandat 476.049 kb on - strandat 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.429 kb on - strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.458 kb on + strand, within GFF1812at 476.459 kb on - strand, within GFF1812at 476.648 kb on - strand, within GFF1812at 476.852 kb on - strandat 476.912 kb on + strand, within GFF1813at 476.912 kb on + strand, within GFF1813at 476.913 kb on - strand, within GFF1813at 476.942 kb on + strand, within GFF1813at 476.942 kb on + strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.943 kb on - strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813at 476.960 kb on + strand, within GFF1813

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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473,819 + GFF1810 0.55 -1.2
473,819 + GFF1810 0.55 -1.3
473,819 + GFF1810 0.55 -0.5
473,819 + GFF1810 0.55 -0.2
473,819 + GFF1810 0.55 -0.5
473,819 + GFF1810 0.55 -0.8
473,820 - GFF1810 0.56 -1.2
473,820 - GFF1810 0.56 +2.4
473,820 - GFF1810 0.56 +0.8
473,858 + GFF1810 0.58 +0.1
473,858 + GFF1810 0.58 -0.7
473,858 + GFF1810 0.58 +0.7
473,858 + GFF1810 0.58 -1.0
473,859 - GFF1810 0.58 -0.9
473,859 - GFF1810 0.58 +0.6
473,859 - GFF1810 0.58 -0.1
473,859 - GFF1810 0.58 -0.8
473,859 - GFF1810 0.58 +0.0
473,859 - GFF1810 0.58 -1.0
473,859 - GFF1810 0.58 +0.3
473,873 + GFF1810 0.59 +0.1
473,873 + GFF1810 0.59 +0.5
473,873 + GFF1810 0.59 +0.0
473,874 - GFF1810 0.59 -0.4
474,002 + GFF1810 0.66 -0.5
474,002 + GFF1810 0.66 -0.1
474,002 + GFF1810 0.66 -0.1
474,003 - GFF1810 0.66 +0.2
474,003 - GFF1810 0.66 +0.2
474,003 - GFF1810 0.66 -1.6
474,003 - GFF1810 0.66 -0.4
474,129 - GFF1810 0.74 -0.3
474,129 - GFF1810 0.74 +0.2
474,129 - GFF1810 0.74 -1.9
474,129 - GFF1810 0.74 -1.0
474,170 + GFF1810 0.76 +0.2
474,170 + GFF1810 0.76 -1.3
474,171 - GFF1810 0.76 +0.1
474,171 - GFF1810 0.76 -0.9
474,230 + GFF1810 0.80 +1.0
474,230 + GFF1810 0.80 +0.6
474,230 + GFF1810 0.80 +0.0
474,230 + GFF1810 0.80 -2.1
474,230 + GFF1810 0.80 +0.7
474,231 - GFF1810 0.80 -0.5
474,231 - GFF1810 0.80 -1.2
474,231 - GFF1810 0.80 -0.7
474,231 - GFF1810 0.80 -0.7
474,231 - GFF1810 0.80 -0.8
474,733 + +0.2
474,733 + +0.2
474,733 + -2.5
474,733 + -0.2
474,734 - -0.5
474,735 + -0.2
474,735 + -0.1
474,735 + -0.2
474,736 - +0.0
474,983 + GFF1811 0.17 -0.9
474,983 + GFF1811 0.17 -0.6
474,983 + GFF1811 0.17 -0.1
474,983 + GFF1811 0.17 -0.3
474,983 + GFF1811 0.17 -0.8
474,983 + GFF1811 0.17 +0.1
474,983 + GFF1811 0.17 -0.7
474,983 + GFF1811 0.17 +0.2
474,983 + GFF1811 0.17 +0.4
474,984 - GFF1811 0.17 +0.2
474,984 - GFF1811 0.17 +0.4
474,984 - GFF1811 0.17 -0.5
474,984 - GFF1811 0.17 +1.8
474,984 - GFF1811 0.17 -0.1
474,984 - GFF1811 0.17 +1.3
474,984 - GFF1811 0.17 +0.5
474,984 - GFF1811 0.17 +0.2
475,148 + GFF1811 0.29 +0.3
475,149 - GFF1811 0.29 -0.4
475,172 + GFF1811 0.31 +0.2
475,172 + GFF1811 0.31 -0.6
475,172 + GFF1811 0.31 -1.1
475,172 + GFF1811 0.31 -0.5
475,172 + GFF1811 0.31 -0.1
475,173 - GFF1811 0.31 -1.2
475,173 - GFF1811 0.31 -0.3
475,173 - GFF1811 0.31 -0.5
475,214 + GFF1811 0.34 +0.1
475,214 + GFF1811 0.34 -0.4
475,215 - GFF1811 0.34 -0.5
475,215 - GFF1811 0.34 -0.2
475,215 - GFF1811 0.34 +0.2
475,289 + GFF1811 0.40 -0.5
475,289 + GFF1811 0.40 -2.2
475,289 + GFF1811 0.40 +0.2
475,290 - GFF1811 0.40 -0.2
475,290 - GFF1811 0.40 -1.0
475,290 - GFF1811 0.40 -1.2
475,290 - GFF1811 0.40 +1.5
475,337 + GFF1811 0.43 -0.1
475,338 - GFF1811 0.43 +0.2
475,338 - GFF1811 0.43 -0.1
475,745 + GFF1811 0.74 +0.7
475,745 + GFF1811 0.74 +0.1
475,745 + GFF1811 0.74 -0.5
475,746 - GFF1811 0.74 -0.3
475,746 - GFF1811 0.74 +0.2
475,826 + GFF1811 0.80 +0.7
475,917 - GFF1811 0.86 +0.2
475,917 - GFF1811 0.86 +0.5
475,917 - GFF1811 0.86 -0.2
475,917 - GFF1811 0.86 +0.6
476,048 + -0.4
476,048 + +0.8
476,049 - -2.5
476,429 - GFF1812 0.51 -0.8
476,429 - GFF1812 0.51 +0.3
476,429 - GFF1812 0.51 -0.1
476,429 - GFF1812 0.51 -2.0
476,458 + GFF1812 0.55 -1.8
476,458 + GFF1812 0.55 -0.1
476,458 + GFF1812 0.55 -1.0
476,459 - GFF1812 0.55 -0.6
476,648 - GFF1812 0.84 +0.4
476,852 - -1.0
476,912 + GFF1813 0.10 +0.2
476,912 + GFF1813 0.10 -1.6
476,913 - GFF1813 0.10 -1.0
476,942 + GFF1813 0.13 +0.0
476,942 + GFF1813 0.13 -1.2
476,943 - GFF1813 0.13 -0.8
476,943 - GFF1813 0.13 -1.3
476,943 - GFF1813 0.13 +0.7
476,960 + GFF1813 0.14 -0.5
476,960 + GFF1813 0.14 +0.3
476,960 + GFF1813 0.14 +2.4
476,960 + GFF1813 0.14 +0.2

Or see this region's nucleotide sequence