Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1793 and GFF1794 are separated by 51 nucleotides GFF1794 and GFF1795 are separated by 28 nucleotides GFF1795 and GFF1796 are separated by 68 nucleotides
GFF1793 - hypothetical protein, at 453,244 to 454,881
GFF1793
GFF1794 - hypothetical protein, at 454,933 to 455,994
GFF1794
GFF1795 - Hydantoin racemase (EC 5.1.99.5), at 456,023 to 456,814
GFF1795
GFF1796 - NADP-dependent malic enzyme (EC 1.1.1.40), at 456,883 to 459,186
GFF1796
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.949 kb on + strand, within GFF1793 at 453.949 kb on + strand, within GFF1793 at 453.949 kb on + strand, within GFF1793 at 453.950 kb on - strand, within GFF1793 at 453.950 kb on - strand, within GFF1793 at 453.950 kb on - strand, within GFF1793 at 454.111 kb on + strand, within GFF1793 at 454.153 kb on + strand, within GFF1793 at 454.153 kb on + strand, within GFF1793 at 454.153 kb on + strand, within GFF1793 at 454.195 kb on + strand, within GFF1793 at 454.195 kb on + strand, within GFF1793 at 454.195 kb on + strand, within GFF1793 at 454.195 kb on + strand, within GFF1793 at 454.196 kb on - strand, within GFF1793 at 454.196 kb on - strand, within GFF1793 at 454.196 kb on - strand, within GFF1793 at 454.196 kb on - strand, within GFF1793 at 454.196 kb on - strand, within GFF1793 at 454.338 kb on - strand, within GFF1793 at 454.338 kb on - strand, within GFF1793 at 454.387 kb on + strand, within GFF1793 at 454.519 kb on + strand, within GFF1793 at 454.519 kb on + strand, within GFF1793 at 454.519 kb on + strand, within GFF1793 at 454.519 kb on + strand, within GFF1793 at 454.519 kb on + strand, within GFF1793 at 454.520 kb on - strand, within GFF1793 at 454.520 kb on - strand, within GFF1793 at 454.567 kb on + strand, within GFF1793 at 454.567 kb on + strand, within GFF1793 at 454.567 kb on + strand, within GFF1793 at 454.567 kb on + strand, within GFF1793 at 454.567 kb on + strand, within GFF1793 at 454.568 kb on - strand, within GFF1793 at 454.568 kb on - strand, within GFF1793 at 454.783 kb on - strand at 454.840 kb on + strand at 454.840 kb on + strand at 454.841 kb on - strand at 454.841 kb on - strand at 454.841 kb on - strand at 454.841 kb on - strand at 454.880 kb on - strand at 455.175 kb on + strand, within GFF1794 at 455.175 kb on + strand, within GFF1794 at 455.175 kb on + strand, within GFF1794 at 455.377 kb on + strand, within GFF1794 at 455.377 kb on + strand, within GFF1794 at 455.378 kb on - strand, within GFF1794 at 455.395 kb on + strand, within GFF1794 at 455.395 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.533 kb on + strand, within GFF1794 at 455.534 kb on - strand, within GFF1794 at 455.593 kb on + strand, within GFF1794 at 455.594 kb on - strand, within GFF1794 at 455.594 kb on - strand, within GFF1794 at 455.668 kb on + strand, within GFF1794 at 455.669 kb on - strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.756 kb on - strand, within GFF1794 at 455.756 kb on - strand, within GFF1794 at 455.935 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.170 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.266 kb on + strand, within GFF1795 at 456.266 kb on + strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.600 kb on - strand, within GFF1795 at 456.600 kb on - strand, within GFF1795 at 456.682 kb on + strand, within GFF1795 at 456.683 kb on - strand, within GFF1795 at 456.884 kb on + strand at 456.884 kb on + strand at 456.884 kb on + strand at 456.884 kb on + strand at 456.885 kb on - strand at 456.885 kb on - strand at 456.885 kb on - strand at 456.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 453,949 + GFF1793 0.43 +0.2 453,949 + GFF1793 0.43 -0.4 453,949 + GFF1793 0.43 +0.0 453,950 - GFF1793 0.43 -0.9 453,950 - GFF1793 0.43 -1.0 453,950 - GFF1793 0.43 +0.0 454,111 + GFF1793 0.53 -0.2 454,153 + GFF1793 0.55 -0.2 454,153 + GFF1793 0.55 -0.5 454,153 + GFF1793 0.55 -0.7 454,195 + GFF1793 0.58 +0.8 454,195 + GFF1793 0.58 +1.2 454,195 + GFF1793 0.58 -1.2 454,195 + GFF1793 0.58 -0.4 454,196 - GFF1793 0.58 -0.1 454,196 - GFF1793 0.58 +0.8 454,196 - GFF1793 0.58 +1.0 454,196 - GFF1793 0.58 +2.2 454,196 - GFF1793 0.58 +0.0 454,338 - GFF1793 0.67 +0.0 454,338 - GFF1793 0.67 -1.2 454,387 + GFF1793 0.70 +1.1 454,519 + GFF1793 0.78 -0.8 454,519 + GFF1793 0.78 +0.1 454,519 + GFF1793 0.78 -0.5 454,519 + GFF1793 0.78 -0.7 454,519 + GFF1793 0.78 +0.3 454,520 - GFF1793 0.78 -0.3 454,520 - GFF1793 0.78 +0.8 454,567 + GFF1793 0.81 -2.3 454,567 + GFF1793 0.81 -0.6 454,567 + GFF1793 0.81 -1.0 454,567 + GFF1793 0.81 -0.4 454,567 + GFF1793 0.81 +0.2 454,568 - GFF1793 0.81 +0.5 454,568 - GFF1793 0.81 -0.8 454,783 - -0.4 454,840 + -1.2 454,840 + -0.7 454,841 - +0.4 454,841 - -0.4 454,841 - -1.0 454,841 - -1.5 454,880 - +0.2 455,175 + GFF1794 0.23 -0.3 455,175 + GFF1794 0.23 -1.2 455,175 + GFF1794 0.23 +0.2 455,377 + GFF1794 0.42 -0.2 455,377 + GFF1794 0.42 -0.3 455,378 - GFF1794 0.42 -0.2 455,395 + GFF1794 0.44 +0.2 455,395 + GFF1794 0.44 -0.5 455,419 + GFF1794 0.46 -0.9 455,419 + GFF1794 0.46 -0.8 455,419 + GFF1794 0.46 -0.2 455,419 + GFF1794 0.46 +0.1 455,533 + GFF1794 0.56 -1.3 455,534 - GFF1794 0.57 -0.5 455,593 + GFF1794 0.62 -0.3 455,594 - GFF1794 0.62 +0.2 455,594 - GFF1794 0.62 +0.8 455,668 + GFF1794 0.69 +1.6 455,669 - GFF1794 0.69 +0.7 455,755 + GFF1794 0.77 -1.9 455,755 + GFF1794 0.77 -0.2 455,755 + GFF1794 0.77 -0.8 455,755 + GFF1794 0.77 -1.5 455,755 + GFF1794 0.77 -0.3 455,755 + GFF1794 0.77 -0.8 455,755 + GFF1794 0.77 -0.8 455,755 + GFF1794 0.77 -0.3 455,756 - GFF1794 0.77 -1.9 455,756 - GFF1794 0.77 +0.2 455,935 + -0.2 456,068 + +0.0 456,068 + +0.4 456,068 + +0.6 456,068 + -0.5 456,068 + -0.4 456,068 + -0.2 456,068 + +0.1 456,069 - +0.6 456,069 - -2.1 456,069 - -1.2 456,069 - +0.4 456,069 - -0.8 456,069 - -0.5 456,069 - -1.2 456,170 + GFF1795 0.19 -0.5 456,179 + GFF1795 0.20 -0.7 456,179 + GFF1795 0.20 +0.1 456,179 + GFF1795 0.20 -0.0 456,179 + GFF1795 0.20 -0.6 456,266 + GFF1795 0.31 -0.1 456,266 + GFF1795 0.31 -0.2 456,267 - GFF1795 0.31 -0.6 456,267 - GFF1795 0.31 +0.4 456,267 - GFF1795 0.31 -1.3 456,600 - GFF1795 0.73 +0.4 456,600 - GFF1795 0.73 +0.2 456,682 + GFF1795 0.83 +0.2 456,683 - GFF1795 0.83 -1.2 456,884 + +0.2 456,884 + +0.4 456,884 + +1.2 456,884 + -1.4 456,885 - +0.4 456,885 - -0.5 456,885 - -0.8 456,885 - -1.5
Or see this region's nucleotide sequence