Strain Fitness in Variovorax sp. SCN45 around GFF177

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF175 and GFF176 overlap by 1 nucleotidesGFF176 and GFF177 overlap by 4 nucleotidesGFF177 and GFF178 are separated by 39 nucleotides GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960 GFF175 GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619 GFF176 GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386 GFF177 GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637 GFF178 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.844 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.928 kb on + strandat 206.928 kb on + strandat 206.928 kb on + strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.996 kb on + strandat 206.997 kb on - strandat 207.173 kb on + strand, within GFF176at 207.173 kb on + strand, within GFF176at 207.174 kb on - strand, within GFF176at 207.185 kb on + strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.266 kb on + strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.591 kb on + strandat 207.591 kb on + strandat 207.591 kb on + strandat 207.664 kb on + strandat 207.664 kb on + strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.686 kb on - strandat 208.170 kb on - strand, within GFF177at 208.170 kb on - strand, within GFF177at 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.419 kb on - strandat 208.562 kb on - strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.631 kb on - strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.649 kb on - strand, within GFF178at 208.649 kb on - strand, within GFF178at 208.741 kb on + strand, within GFF178at 208.741 kb on + strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.838 kb on - strand, within GFF178at 208.852 kb on + strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.928 kb on - strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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206,844 + GFF175 0.82 -0.7
206,883 + GFF175 0.88 +0.4
206,883 + GFF175 0.88 -0.7
206,883 + GFF175 0.88 +1.3
206,883 + GFF175 0.88 +0.8
206,883 + GFF175 0.88 -1.0
206,884 - GFF175 0.88 -0.1
206,884 - GFF175 0.88 +0.1
206,884 - GFF175 0.88 -2.4
206,884 - GFF175 0.88 -0.1
206,884 - GFF175 0.88 -0.2
206,884 - GFF175 0.88 -0.9
206,884 - GFF175 0.88 -1.2
206,928 + +0.1
206,928 + -2.4
206,928 + +0.5
206,929 - +0.2
206,929 - -1.3
206,929 - +0.3
206,929 - -0.9
206,929 - -0.2
206,996 + +0.8
206,997 - +0.4
207,173 + GFF176 0.32 -0.2
207,173 + GFF176 0.32 -0.2
207,174 - GFF176 0.32 -0.2
207,185 + GFF176 0.34 -0.6
207,186 - GFF176 0.34 -0.7
207,186 - GFF176 0.34 -1.0
207,186 - GFF176 0.34 -1.3
207,186 - GFF176 0.34 -1.2
207,266 + GFF176 0.46 +0.4
207,267 - GFF176 0.47 -0.3
207,267 - GFF176 0.47 -0.6
207,548 + GFF176 0.89 -0.0
207,548 + GFF176 0.89 -1.0
207,549 - GFF176 0.89 -1.0
207,549 - GFF176 0.89 -1.2
207,591 + -0.2
207,591 + +0.7
207,591 + -1.3
207,664 + -0.7
207,664 + -0.7
207,665 - +1.6
207,665 - -0.5
207,665 - -0.3
207,665 - -0.9
207,685 + -0.5
207,685 + -0.5
207,685 + -0.7
207,685 + -0.6
207,686 - -0.5
208,170 - GFF177 0.72 +0.5
208,170 - GFF177 0.72 +0.6
208,418 + -0.5
208,418 + -0.2
208,418 + -0.2
208,418 + -1.6
208,419 - +0.2
208,562 - GFF178 0.11 -0.2
208,630 + GFF178 0.17 -0.2
208,630 + GFF178 0.17 -1.3
208,630 + GFF178 0.17 -0.0
208,631 - GFF178 0.17 -1.1
208,636 + GFF178 0.17 +0.0
208,636 + GFF178 0.17 +0.3
208,636 + GFF178 0.17 -0.2
208,636 + GFF178 0.17 -1.2
208,637 - GFF178 0.17 -0.2
208,637 - GFF178 0.17 +0.2
208,637 - GFF178 0.17 -0.5
208,637 - GFF178 0.17 -0.6
208,637 - GFF178 0.17 -1.2
208,637 - GFF178 0.17 +0.3
208,637 - GFF178 0.17 -1.0
208,649 - GFF178 0.18 -0.4
208,649 - GFF178 0.18 -0.6
208,741 + GFF178 0.26 +1.8
208,741 + GFF178 0.26 +0.2
208,742 - GFF178 0.26 +0.1
208,742 - GFF178 0.26 -1.4
208,742 - GFF178 0.26 +1.1
208,784 - GFF178 0.30 -0.5
208,784 - GFF178 0.30 -0.9
208,784 - GFF178 0.30 -0.4
208,837 + GFF178 0.34 -0.8
208,837 + GFF178 0.34 +0.3
208,837 + GFF178 0.34 -0.0
208,838 - GFF178 0.34 -0.4
208,852 + GFF178 0.35 +0.0
208,853 - GFF178 0.35 -0.0
208,853 - GFF178 0.35 +0.1
208,900 + GFF178 0.39 +0.2
208,900 + GFF178 0.39 +0.3
208,900 + GFF178 0.39 -0.6
208,900 + GFF178 0.39 +0.4
208,900 + GFF178 0.39 +0.5
208,901 - GFF178 0.39 +1.6
208,901 - GFF178 0.39 +0.3
208,901 - GFF178 0.39 -0.1
208,901 - GFF178 0.39 -1.2
208,901 - GFF178 0.39 +1.0
208,927 + GFF178 0.41 +0.1
208,927 + GFF178 0.41 -0.2
208,928 - GFF178 0.41 +0.8
208,981 + GFF178 0.46 -1.2
208,981 + GFF178 0.46 -1.2
208,981 + GFF178 0.46 -0.3
208,981 + GFF178 0.46 -0.8
208,981 + GFF178 0.46 +0.3
208,982 - GFF178 0.46 +0.2
208,982 - GFF178 0.46 -1.0
208,982 - GFF178 0.46 -0.9
208,982 - GFF178 0.46 -1.6
208,982 - GFF178 0.46 -0.3
208,982 - GFF178 0.46 -0.5
209,338 + GFF178 0.75 -0.4
209,338 + GFF178 0.75 -0.2
209,338 + GFF178 0.75 -0.4
209,339 - GFF178 0.75 +1.1
209,339 - GFF178 0.75 +1.1
209,339 - GFF178 0.75 -1.7
209,339 - GFF178 0.75 -0.0

Or see this region's nucleotide sequence