Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1763 and GFF1764 overlap by 7 nucleotides GFF1764 and GFF1765 are separated by 88 nucleotides GFF1765 and GFF1766 overlap by 14 nucleotides
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
GFF1766 - no description, at 428,221 to 429,402
GFF1766
Position (kb) 427
428
429 Strain fitness (log2 ratio) -1
0
1 at 426.268 kb on - strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765 at 428.128 kb on + strand at 428.129 kb on - strand at 428.630 kb on + strand, within GFF1766 at 428.631 kb on - strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.640 kb on - strand, within GFF1766 at 428.654 kb on + strand, within GFF1766 at 428.655 kb on - strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.880 kb on - strand, within GFF1766 at 428.934 kb on - strand, within GFF1766 at 429.146 kb on + strand, within GFF1766 at 429.147 kb on - strand, within GFF1766 at 429.182 kb on + strand, within GFF1766 at 429.183 kb on - strand, within GFF1766
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 426,268 - GFF1764 0.22 -0.2 426,375 + GFF1764 0.34 +0.5 426,375 + GFF1764 0.34 -0.3 426,382 - GFF1764 0.35 +0.7 426,382 - GFF1764 0.35 +0.3 427,044 + -0.2 427,045 - +0.8 427,045 - +0.3 427,888 + GFF1765 0.71 -0.9 427,888 + GFF1765 0.71 -0.9 428,128 + -0.3 428,129 - -1.0 428,630 + GFF1766 0.35 -0.9 428,631 - GFF1766 0.35 -0.9 428,639 + GFF1766 0.35 +0.5 428,639 + GFF1766 0.35 -0.7 428,640 - GFF1766 0.35 -1.2 428,654 + GFF1766 0.37 -0.9 428,655 - GFF1766 0.37 +0.0 428,879 + GFF1766 0.56 +0.8 428,879 + GFF1766 0.56 -0.1 428,879 + GFF1766 0.56 -1.6 428,879 + GFF1766 0.56 -0.3 428,879 + GFF1766 0.56 +0.7 428,879 + GFF1766 0.56 +0.7 428,880 - GFF1766 0.56 -0.1 428,934 - GFF1766 0.60 +0.1 429,146 + GFF1766 0.78 -1.5 429,147 - GFF1766 0.78 +0.0 429,182 + GFF1766 0.81 +0.1 429,183 - GFF1766 0.81 -0.2
Or see this region's nucleotide sequence