Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1730 and GFF1731 are separated by 122 nucleotides GFF1731 and GFF1732 are separated by 525 nucleotides GFF1732 and GFF1733 are separated by 186 nucleotides
GFF1730 - Dihydrofolate reductase homolog, at 391,078 to 391,734
GFF1730
GFF1731 - Short-chain dehydrogenase/reductase SDR?, at 391,857 to 392,612
GFF1731
GFF1732 - DNA-binding protein HU-beta, at 393,138 to 393,425
GFF1732
GFF1733 - Cell wall-associated hydrolases (invasion-associated proteins), at 393,612 to 394,115
GFF1733
Position (kb) 391
392
393 Strain fitness (log2 ratio) -2
-1
0
1 at 391.145 kb on + strand, within GFF1730 at 391.146 kb on - strand, within GFF1730 at 391.250 kb on + strand, within GFF1730 at 391.424 kb on + strand, within GFF1730 at 391.425 kb on - strand, within GFF1730 at 391.723 kb on + strand at 391.724 kb on - strand at 391.770 kb on - strand at 391.819 kb on - strand at 391.819 kb on - strand at 391.996 kb on + strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.063 kb on - strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.349 kb on + strand, within GFF1731 at 392.350 kb on - strand, within GFF1731 at 392.899 kb on + strand at 392.899 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.937 kb on - strand at 392.937 kb on - strand at 392.981 kb on + strand at 392.981 kb on + strand at 392.981 kb on + strand at 392.982 kb on - strand at 393.063 kb on + strand at 393.064 kb on - strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.424 kb on - strand at 393.424 kb on - strand at 393.424 kb on - strand at 393.540 kb on - strand at 393.540 kb on - strand at 393.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 391,145 + GFF1730 0.10 -0.8 391,146 - GFF1730 0.10 -0.4 391,250 + GFF1730 0.26 -0.3 391,424 + GFF1730 0.53 -0.2 391,425 - GFF1730 0.53 -0.6 391,723 + -0.2 391,724 - -0.2 391,770 - -1.3 391,819 - -0.7 391,819 - +0.4 391,996 + GFF1731 0.18 -2.3 391,997 - GFF1731 0.19 -1.1 391,997 - GFF1731 0.19 +1.4 391,997 - GFF1731 0.19 +0.8 391,997 - GFF1731 0.19 -0.8 392,062 + GFF1731 0.27 +0.8 392,062 + GFF1731 0.27 -0.2 392,062 + GFF1731 0.27 -0.2 392,062 + GFF1731 0.27 +0.2 392,063 - GFF1731 0.27 +0.6 392,158 + GFF1731 0.40 +0.2 392,158 + GFF1731 0.40 -0.3 392,158 + GFF1731 0.40 +0.4 392,158 + GFF1731 0.40 -0.3 392,159 - GFF1731 0.40 +0.4 392,159 - GFF1731 0.40 -0.3 392,159 - GFF1731 0.40 +0.5 392,159 - GFF1731 0.40 +0.2 392,159 - GFF1731 0.40 -0.2 392,349 + GFF1731 0.65 +0.4 392,350 - GFF1731 0.65 -0.3 392,899 + -1.3 392,899 + -0.3 392,936 + -0.2 392,936 + -1.3 392,936 + -0.2 392,936 + -0.2 392,937 - -0.5 392,937 - -0.9 392,981 + +0.8 392,981 + +0.2 392,981 + -0.5 392,982 - -0.5 393,063 + -0.4 393,064 - -0.1 393,423 + -0.3 393,423 + -0.0 393,423 + -1.2 393,423 + +0.2 393,424 - +0.8 393,424 - -0.5 393,424 - -0.2 393,540 - -0.1 393,540 - -0.1 393,540 - -1.1
Or see this region's nucleotide sequence