Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1682 and GFF1683 overlap by 4 nucleotides GFF1683 and GFF1684 overlap by 4 nucleotides GFF1684 and GFF1685 are separated by 57 nucleotides
GFF1682 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 326,900 to 328,300
GFF1682
GFF1683 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 328,297 to 328,929
GFF1683
GFF1684 - no description, at 328,926 to 329,564
GFF1684
GFF1685 - BUG/TctC family periplasmic protein, at 329,622 to 330,620
GFF1685
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.423 kb on + strand, within GFF1683 at 329.359 kb on - strand, within GFF1684 at 329.359 kb on - strand, within GFF1684 at 329.400 kb on + strand, within GFF1684 at 329.415 kb on + strand, within GFF1684 at 329.415 kb on + strand, within GFF1684 at 329.919 kb on + strand, within GFF1685 at 329.919 kb on + strand, within GFF1685 at 329.920 kb on - strand, within GFF1685 at 330.091 kb on - strand, within GFF1685 at 330.205 kb on - strand, within GFF1685 at 330.291 kb on + strand, within GFF1685 at 330.292 kb on - strand, within GFF1685 at 330.402 kb on - strand, within GFF1685
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 328,423 + GFF1683 0.20 +0.3 329,359 - GFF1684 0.68 -2.5 329,359 - GFF1684 0.68 -0.9 329,400 + GFF1684 0.74 -0.3 329,415 + GFF1684 0.77 +0.2 329,415 + GFF1684 0.77 +0.1 329,919 + GFF1685 0.30 +0.2 329,919 + GFF1685 0.30 -0.5 329,920 - GFF1685 0.30 -0.1 330,091 - GFF1685 0.47 +2.2 330,205 - GFF1685 0.58 -0.4 330,291 + GFF1685 0.67 +0.6 330,292 - GFF1685 0.67 +0.3 330,402 - GFF1685 0.78 -1.8
Or see this region's nucleotide sequence