Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1631 and GFF1632 are separated by 136 nucleotides GFF1632 and GFF1633 are separated by 8 nucleotides GFF1633 and GFF1634 are separated by 126 nucleotides
GFF1631 - L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein, at 232,610 to 233,926
GFF1631
GFF1632 - RNA polymerase ECF-type sigma factor, at 234,063 to 234,695
GFF1632
GFF1633 - Probable transmembrane sensor, at 234,704 to 235,771
GFF1633
GFF1634 - Ferrichrome-iron receptor, at 235,898 to 238,288
GFF1634
Position (kb) 234
235
236 Strain fitness (log2 ratio) -1
0
1
2 at 234.088 kb on + strand at 234.088 kb on + strand at 234.097 kb on - strand at 234.507 kb on + strand, within GFF1632 at 234.508 kb on - strand, within GFF1632 at 234.668 kb on + strand at 235.050 kb on - strand, within GFF1633 at 235.050 kb on - strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.583 kb on + strand, within GFF1633 at 235.583 kb on + strand, within GFF1633 at 235.806 kb on + strand at 235.806 kb on + strand at 235.806 kb on + strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.018 kb on - strand at 236.346 kb on - strand, within GFF1634 at 236.346 kb on - strand, within GFF1634 at 236.411 kb on + strand, within GFF1634 at 236.474 kb on + strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.475 kb on - strand, within GFF1634 at 236.498 kb on - strand, within GFF1634 at 236.498 kb on - strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.591 kb on + strand, within GFF1634 at 236.592 kb on - strand, within GFF1634 at 236.592 kb on - strand, within GFF1634 at 236.660 kb on + strand, within GFF1634 at 236.660 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.693 kb on + strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.694 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.700 kb on - strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.747 kb on + strand, within GFF1634 at 236.748 kb on - strand, within GFF1634 at 236.765 kb on + strand, within GFF1634 at 236.766 kb on - strand, within GFF1634 at 236.766 kb on - strand, within GFF1634 at 236.766 kb on - strand, within GFF1634
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 234,088 + -1.0 234,088 + -0.6 234,097 - +1.2 234,507 + GFF1632 0.70 +0.2 234,508 - GFF1632 0.70 -0.5 234,668 + -0.5 235,050 - GFF1633 0.32 -0.6 235,050 - GFF1633 0.32 +0.2 235,079 + GFF1633 0.35 +1.8 235,079 + GFF1633 0.35 +0.1 235,079 + GFF1633 0.35 +1.1 235,079 + GFF1633 0.35 +0.6 235,452 + GFF1633 0.70 +2.5 235,452 + GFF1633 0.70 -0.0 235,452 + GFF1633 0.70 -0.4 235,453 - GFF1633 0.70 -0.2 235,453 - GFF1633 0.70 +0.8 235,453 - GFF1633 0.70 -0.5 235,583 + GFF1633 0.82 -1.2 235,583 + GFF1633 0.82 +0.1 235,806 + -0.6 235,806 + -0.7 235,806 + -0.5 236,018 - -0.1 236,018 - +0.6 236,018 - -1.7 236,018 - -0.2 236,346 - GFF1634 0.19 +0.1 236,346 - GFF1634 0.19 +0.0 236,411 + GFF1634 0.21 -0.1 236,474 + GFF1634 0.24 -0.4 236,475 - GFF1634 0.24 +0.1 236,475 - GFF1634 0.24 -0.5 236,475 - GFF1634 0.24 -0.2 236,475 - GFF1634 0.24 +0.5 236,498 - GFF1634 0.25 +0.6 236,498 - GFF1634 0.25 -0.0 236,591 + GFF1634 0.29 -0.1 236,591 + GFF1634 0.29 -1.1 236,591 + GFF1634 0.29 -0.3 236,592 - GFF1634 0.29 -0.5 236,592 - GFF1634 0.29 -0.8 236,660 + GFF1634 0.32 +1.2 236,660 + GFF1634 0.32 +0.3 236,693 + GFF1634 0.33 -0.4 236,693 + GFF1634 0.33 +0.6 236,693 + GFF1634 0.33 +0.5 236,694 - GFF1634 0.33 +0.3 236,694 - GFF1634 0.33 -1.1 236,694 - GFF1634 0.33 +0.7 236,700 - GFF1634 0.34 -0.4 236,700 - GFF1634 0.34 +0.5 236,700 - GFF1634 0.34 +0.1 236,700 - GFF1634 0.34 +0.4 236,700 - GFF1634 0.34 -1.1 236,700 - GFF1634 0.34 -0.1 236,747 + GFF1634 0.36 +0.6 236,747 + GFF1634 0.36 +0.8 236,747 + GFF1634 0.36 -0.2 236,748 - GFF1634 0.36 +0.8 236,765 + GFF1634 0.36 +0.8 236,766 - GFF1634 0.36 -0.3 236,766 - GFF1634 0.36 -1.0 236,766 - GFF1634 0.36 -0.3
Or see this region's nucleotide sequence