Strain Fitness in Variovorax sp. SCN45 around GFF1592

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1590 and GFF1591 are separated by 0 nucleotidesGFF1591 and GFF1592 overlap by 4 nucleotidesGFF1592 and GFF1593 are separated by 70 nucleotidesGFF1593 and GFF1594 overlap by 4 nucleotidesGFF1594 and GFF1595 are separated by 115 nucleotides GFF1590 - FIG057251: Fe-S oxidoreductase, at 188,722 to 189,111 GFF1590 GFF1591 - FIG066100: Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 189,112 to 189,852 GFF1591 GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089 GFF1592 GFF1593 - no description, at 192,160 to 192,456 GFF1593 GFF1594 - Antitoxin DinJ (binds YafQ toxin), at 192,453 to 192,761 GFF1594 GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851 GFF1595 Position (kb) 189 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 188.866 kb on + strand, within GFF1590at 188.866 kb on + strand, within GFF1590at 188.866 kb on + strand, within GFF1590at 188.866 kb on + strand, within GFF1590at 188.867 kb on - strand, within GFF1590at 188.917 kb on + strand, within GFF1590at 189.010 kb on + strand, within GFF1590at 189.011 kb on - strand, within GFF1590at 189.248 kb on - strand, within GFF1591at 189.248 kb on - strand, within GFF1591at 189.676 kb on + strand, within GFF1591at 189.676 kb on + strand, within GFF1591at 189.676 kb on + strand, within GFF1591at 189.676 kb on + strand, within GFF1591at 189.677 kb on - strand, within GFF1591at 189.677 kb on - strand, within GFF1591at 189.677 kb on - strand, within GFF1591at 189.677 kb on - strand, within GFF1591at 189.677 kb on - strand, within GFF1591at 189.763 kb on + strand, within GFF1591at 189.763 kb on + strand, within GFF1591at 189.764 kb on - strand, within GFF1591at 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.787 kb on + strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 189.788 kb on - strandat 190.012 kb on - strandat 190.212 kb on + strand, within GFF1592at 190.213 kb on - strand, within GFF1592at 190.293 kb on + strand, within GFF1592at 190.294 kb on - strand, within GFF1592at 190.294 kb on - strand, within GFF1592at 190.611 kb on + strand, within GFF1592at 190.611 kb on + strand, within GFF1592at 190.789 kb on - strand, within GFF1592at 190.789 kb on - strand, within GFF1592at 190.789 kb on - strand, within GFF1592at 190.797 kb on + strand, within GFF1592at 190.797 kb on + strand, within GFF1592at 190.798 kb on - strand, within GFF1592at 190.798 kb on - strand, within GFF1592at 190.798 kb on - strand, within GFF1592at 190.798 kb on - strand, within GFF1592at 191.142 kb on + strand, within GFF1592at 191.142 kb on + strand, within GFF1592at 191.247 kb on + strand, within GFF1592at 191.247 kb on + strand, within GFF1592at 191.340 kb on + strand, within GFF1592at 191.340 kb on + strand, within GFF1592at 191.340 kb on + strand, within GFF1592at 191.340 kb on + strand, within GFF1592at 191.341 kb on - strand, within GFF1592at 191.767 kb on - strand, within GFF1592at 191.781 kb on + strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.982 kb on + strandat 191.982 kb on + strandat 191.982 kb on + strandat 191.983 kb on - strandat 191.983 kb on - strandat 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.409 kb on + strand, within GFF1593at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.678 kb on - strand, within GFF1594at 192.798 kb on + strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 193.001 kb on + strand, within GFF1595at 193.059 kb on + strand, within GFF1595at 193.060 kb on - strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
188,866 + GFF1590 0.37 +0.0
188,866 + GFF1590 0.37 -0.7
188,866 + GFF1590 0.37 +0.8
188,866 + GFF1590 0.37 +1.6
188,867 - GFF1590 0.37 -0.3
188,917 + GFF1590 0.50 -0.2
189,010 + GFF1590 0.74 -0.0
189,011 - GFF1590 0.74 -0.7
189,248 - GFF1591 0.18 +0.1
189,248 - GFF1591 0.18 +0.1
189,676 + GFF1591 0.76 -1.4
189,676 + GFF1591 0.76 -0.9
189,676 + GFF1591 0.76 -0.6
189,676 + GFF1591 0.76 +0.0
189,677 - GFF1591 0.76 +0.0
189,677 - GFF1591 0.76 -0.1
189,677 - GFF1591 0.76 +0.1
189,677 - GFF1591 0.76 -0.9
189,677 - GFF1591 0.76 +0.1
189,763 + GFF1591 0.88 -0.6
189,763 + GFF1591 0.88 -0.3
189,764 - GFF1591 0.88 +0.4
189,787 + +0.1
189,787 + -0.2
189,787 + +0.6
189,787 + +0.6
189,787 + +2.2
189,787 + -0.7
189,787 + -1.0
189,787 + -1.9
189,787 + -0.6
189,788 - +0.5
189,788 - -0.0
189,788 - +0.5
189,788 - -0.4
189,788 - +0.1
189,788 - -0.0
189,788 - -0.0
189,788 - -2.2
189,788 - -1.3
190,012 - +0.3
190,212 + GFF1592 0.16 +0.6
190,213 - GFF1592 0.16 -0.6
190,293 + GFF1592 0.20 -0.6
190,294 - GFF1592 0.20 +0.1
190,294 - GFF1592 0.20 +0.4
190,611 + GFF1592 0.34 +0.4
190,611 + GFF1592 0.34 -0.2
190,789 - GFF1592 0.42 +1.6
190,789 - GFF1592 0.42 -0.0
190,789 - GFF1592 0.42 +0.0
190,797 + GFF1592 0.42 -0.0
190,797 + GFF1592 0.42 -0.5
190,798 - GFF1592 0.42 -0.0
190,798 - GFF1592 0.42 +0.2
190,798 - GFF1592 0.42 -0.5
190,798 - GFF1592 0.42 -1.4
191,142 + GFF1592 0.58 -1.1
191,142 + GFF1592 0.58 -1.9
191,247 + GFF1592 0.62 -0.4
191,247 + GFF1592 0.62 +0.7
191,340 + GFF1592 0.67 +0.1
191,340 + GFF1592 0.67 +0.1
191,340 + GFF1592 0.67 +0.5
191,340 + GFF1592 0.67 +0.4
191,341 - GFF1592 0.67 +0.1
191,767 - GFF1592 0.86 -0.2
191,781 + GFF1592 0.86 +1.4
191,782 - GFF1592 0.86 +0.8
191,782 - GFF1592 0.86 -0.5
191,782 - GFF1592 0.86 +0.7
191,982 + -0.2
191,982 + +0.2
191,982 + +0.8
191,983 - -0.4
191,983 - -0.2
192,257 + GFF1593 0.33 +0.8
192,257 + GFF1593 0.33 -0.7
192,257 + GFF1593 0.33 -1.0
192,257 + GFF1593 0.33 -0.2
192,257 + GFF1593 0.33 +0.6
192,257 + GFF1593 0.33 +0.7
192,257 + GFF1593 0.33 +1.4
192,257 + GFF1593 0.33 +0.5
192,257 + GFF1593 0.33 -0.7
192,258 - GFF1593 0.33 -0.5
192,258 - GFF1593 0.33 -0.5
192,258 - GFF1593 0.33 +1.5
192,258 - GFF1593 0.33 +1.2
192,258 - GFF1593 0.33 -0.4
192,340 + GFF1593 0.61 +1.8
192,340 + GFF1593 0.61 -1.4
192,341 - GFF1593 0.61 +0.5
192,341 - GFF1593 0.61 -2.0
192,341 - GFF1593 0.61 +0.3
192,341 - GFF1593 0.61 +0.3
192,341 - GFF1593 0.61 -0.4
192,341 - GFF1593 0.61 -1.2
192,409 + GFF1593 0.84 -0.4
192,677 + GFF1594 0.72 -0.1
192,677 + GFF1594 0.72 +0.0
192,677 + GFF1594 0.72 -0.0
192,677 + GFF1594 0.72 -0.7
192,677 + GFF1594 0.72 +0.6
192,678 - GFF1594 0.73 -0.2
192,798 + -0.0
192,892 - -0.5
192,892 - +0.0
192,892 - -0.2
192,892 - +0.0
193,001 + GFF1595 0.13 +0.8
193,059 + GFF1595 0.19 -0.8
193,060 - GFF1595 0.19 -0.1
193,088 + GFF1595 0.22 +0.8
193,088 + GFF1595 0.22 -0.1
193,088 + GFF1595 0.22 +0.6
193,088 + GFF1595 0.22 -0.1
193,088 + GFF1595 0.22 +0.0
193,089 - GFF1595 0.22 +0.1
193,089 - GFF1595 0.22 +1.1
193,089 - GFF1595 0.22 -0.2
193,089 - GFF1595 0.22 -0.0
193,089 - GFF1595 0.22 -0.9
193,089 - GFF1595 0.22 +0.1
193,089 - GFF1595 0.22 -0.0
193,089 - GFF1595 0.22 +1.1

Or see this region's nucleotide sequence