Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1586 and GFF1587 are separated by 0 nucleotides GFF1587 and GFF1588 are separated by 197 nucleotides
GFF1586 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 185,053 to 186,078
GFF1586
GFF1587 - no description, at 186,079 to 186,669
GFF1587
GFF1588 - Serine phosphatase RsbU, regulator of sigma subunit, at 186,867 to 188,099
GFF1588
Position (kb) 186
187 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 185.212 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.549 kb on + strand, within GFF1586 at 185.550 kb on - strand, within GFF1586 at 186.052 kb on + strand at 186.170 kb on + strand, within GFF1587 at 186.170 kb on + strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.715 kb on + strand at 186.715 kb on + strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.810 kb on + strand at 186.810 kb on + strand at 186.829 kb on - strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.846 kb on - strand at 186.885 kb on + strand at 186.886 kb on - strand at 186.886 kb on - strand at 187.110 kb on + strand, within GFF1588 at 187.110 kb on + strand, within GFF1588 at 187.111 kb on - strand, within GFF1588 at 187.344 kb on + strand, within GFF1588 at 187.345 kb on - strand, within GFF1588 at 187.347 kb on + strand, within GFF1588 at 187.631 kb on + strand, within GFF1588 at 187.640 kb on + strand, within GFF1588
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 185,212 + GFF1586 0.15 -0.8 185,404 + GFF1586 0.34 +0.6 185,404 + GFF1586 0.34 -0.2 185,549 + GFF1586 0.48 -0.4 185,550 - GFF1586 0.48 +0.2 186,052 + -0.2 186,170 + GFF1587 0.15 +0.5 186,170 + GFF1587 0.15 +0.6 186,171 - GFF1587 0.16 +1.0 186,171 - GFF1587 0.16 +0.4 186,688 + -0.0 186,688 + +1.0 186,688 + +0.1 186,689 - -0.6 186,689 - +0.5 186,689 - -1.0 186,689 - +0.4 186,690 + -0.2 186,690 + -0.4 186,690 + +1.5 186,690 + -0.4 186,690 + +0.2 186,691 - -1.1 186,691 - +0.7 186,691 - +0.6 186,691 - +0.2 186,691 - +0.3 186,691 - -0.0 186,715 + +0.8 186,715 + -0.7 186,716 - -1.0 186,716 - -0.7 186,716 - -0.3 186,806 + +1.0 186,806 + -0.5 186,806 + -0.5 186,806 + -0.3 186,806 + -0.2 186,806 + -1.4 186,807 - -1.9 186,807 - +0.6 186,807 - -0.3 186,807 - -0.8 186,807 - -0.5 186,810 + -0.4 186,810 + +0.2 186,829 - -0.4 186,833 + -0.2 186,833 + -0.2 186,833 + +0.2 186,833 + -0.4 186,833 + +0.6 186,833 + +0.7 186,833 + +2.8 186,833 + -0.2 186,833 + -0.0 186,834 - -0.0 186,834 - -0.2 186,834 - +1.4 186,834 - +1.4 186,834 - +0.2 186,834 - +0.5 186,834 - -0.1 186,834 - -1.3 186,837 + -1.0 186,837 + -1.1 186,837 + -2.2 186,838 - +0.0 186,838 - -1.6 186,838 - +0.4 186,845 + -1.0 186,845 + -1.4 186,845 + +0.4 186,845 + -1.2 186,845 + -0.2 186,845 + -0.2 186,845 + -0.5 186,846 - -0.6 186,885 + -0.4 186,886 - +1.0 186,886 - +0.5 187,110 + GFF1588 0.20 -0.2 187,110 + GFF1588 0.20 +0.4 187,111 - GFF1588 0.20 -0.1 187,344 + GFF1588 0.39 -0.5 187,345 - GFF1588 0.39 -0.5 187,347 + GFF1588 0.39 -0.8 187,631 + GFF1588 0.62 +0.2 187,640 + GFF1588 0.63 +0.9
Or see this region's nucleotide sequence