Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF1527

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	phage_bap4
				remove
122,286	+	GFF1526	0.39	-0.4
122,286	+	GFF1526	0.39	+0.2
122,286	+	GFF1526	0.39	-1.6
122,287	-	GFF1526	0.39	-0.8
122,287	-	GFF1526	0.39	-0.6
122,287	-	GFF1526	0.39	-0.3
122,287	-	GFF1526	0.39	-1.1
122,287	-	GFF1526	0.39	-0.8
122,287	-	GFF1526	0.39	-1.6
122,287	-	GFF1526	0.39	-0.0
122,391	+	GFF1526	0.48	-1.3
122,391	+	GFF1526	0.48	-0.7
122,391	+	GFF1526	0.48	+0.0
122,392	-	GFF1526	0.48	-0.4
122,392	-	GFF1526	0.48	+0.9
122,392	-	GFF1526	0.48	-1.6
122,392	-	GFF1526	0.48	-0.8
122,392	-	GFF1526	0.48	+0.1
122,527	-	GFF1526	0.60	-0.7
122,527	-	GFF1526	0.60	+1.2
122,527	-	GFF1526	0.60	-0.5
122,527	-	GFF1526	0.60	+1.2
122,600	-	GFF1526	0.66	+0.6
122,796	+	GFF1526	0.83	+0.3
122,804	+	GFF1526	0.84	+0.7
122,804	+	GFF1526	0.84	-0.4
123,130	+			-0.6
123,545	-	GFF1527	0.17	-0.4
123,682	+	GFF1527	0.22	-0.1
123,682	+	GFF1527	0.22	-0.1
123,683	-	GFF1527	0.22	+0.6
123,683	-	GFF1527	0.22	-0.6
123,710	-	GFF1527	0.23	-0.5
123,710	-	GFF1527	0.23	-0.2
123,728	-	GFF1527	0.24	-0.4
123,764	+	GFF1527	0.25	+0.3
123,765	-	GFF1527	0.25	-0.3
123,765	-	GFF1527	0.25	-1.7
123,775	+	GFF1527	0.26	+0.7
123,775	+	GFF1527	0.26	+0.1
123,775	+	GFF1527	0.26	-1.0
123,775	+	GFF1527	0.26	+4.0
123,776	-	GFF1527	0.26	+0.1
123,830	-	GFF1527	0.28	-0.5
123,877	+	GFF1527	0.30	-1.1
123,877	+	GFF1527	0.30	+0.2
123,877	+	GFF1527	0.30	+0.0
124,033	+	GFF1527	0.36	-2.0
124,065	+	GFF1527	0.38	-0.8
124,066	-	GFF1527	0.38	-0.0
124,078	+	GFF1527	0.38	-0.7
124,078	+	GFF1527	0.38	+0.5
124,079	-	GFF1527	0.38	-0.1
124,099	+	GFF1527	0.39	+0.0
124,099	+	GFF1527	0.39	-2.2
124,099	+	GFF1527	0.39	-0.3
124,099	+	GFF1527	0.39	+0.6
124,100	-	GFF1527	0.39	+1.3
124,100	-	GFF1527	0.39	+1.0
124,100	-	GFF1527	0.39	+0.1
124,162	+	GFF1527	0.42	+0.2
124,162	+	GFF1527	0.42	-0.5
124,163	-	GFF1527	0.42	+0.3
124,163	-	GFF1527	0.42	+0.9
124,196	-	GFF1527	0.43	+0.0
124,294	+	GFF1527	0.47	-2.0
124,294	+	GFF1527	0.47	-0.6
124,295	-	GFF1527	0.47	-0.1
124,375	+	GFF1527	0.50	-0.6
124,376	-	GFF1527	0.50	-0.5
124,387	+	GFF1527	0.51	+2.7
124,387	+	GFF1527	0.51	-0.3
124,388	-	GFF1527	0.51	+0.0
124,388	-	GFF1527	0.51	+0.7
124,489	+	GFF1527	0.55	-1.1
124,489	+	GFF1527	0.55	-0.3
124,580	-	GFF1527	0.59	-0.3
124,580	-	GFF1527	0.59	+1.7
124,705	+	GFF1527	0.64	-0.5
124,705	+	GFF1527	0.64	-0.4
124,705	+	GFF1527	0.64	-0.6
124,706	-	GFF1527	0.64	-0.4
124,706	-	GFF1527	0.64	-0.2
124,706	-	GFF1527	0.64	-0.6
124,706	-	GFF1527	0.64	-0.4
124,855	+	GFF1527	0.70	-0.1
124,855	+	GFF1527	0.70	-0.8
124,856	-	GFF1527	0.70	-1.8
124,984	+	GFF1527	0.75	+1.6
125,026	+	GFF1527	0.77	-0.2
125,027	-	GFF1527	0.77	-0.4
125,027	-	GFF1527	0.77	+0.7
125,167	+	GFF1527	0.82	+0.7
125,167	+	GFF1527	0.82	-0.8
125,167	+	GFF1527	0.82	+1.1
125,167	+	GFF1527	0.82	-2.0
125,173	+	GFF1527	0.83	+0.5
125,173	+	GFF1527	0.83	+0.0
125,173	+	GFF1527	0.83	+1.7
125,173	+	GFF1527	0.83	+1.4
125,173	+	GFF1527	0.83	+0.6
125,173	+	GFF1527	0.83	-1.4
125,173	+	GFF1527	0.83	+0.2
125,173	+	GFF1527	0.83	-0.4
125,173	+	GFF1527	0.83	-1.3
125,173	+	GFF1527	0.83	-0.3
125,173	+	GFF1527	0.83	-0.8
125,173	+	GFF1527	0.83	-0.3
125,173	+	GFF1527	0.83	-0.2
125,173	+	GFF1527	0.83	-0.4
125,173	+	GFF1527	0.83	-0.4
125,173	+	GFF1527	0.83	+0.6
125,173	+	GFF1527	0.83	-1.3
125,174	-	GFF1527	0.83	-0.0
125,174	-	GFF1527	0.83	+0.2
125,174	-	GFF1527	0.83	-1.7
125,174	-	GFF1527	0.83	+0.2
125,174	-	GFF1527	0.83	-0.9
125,174	-	GFF1527	0.83	-0.9
125,174	-	GFF1527	0.83	-1.0
125,174	-	GFF1527	0.83	-1.8
125,281	+	GFF1527	0.87	+0.5
125,281	+	GFF1527	0.87	-0.1
125,281	+	GFF1527	0.87	+0.5
125,281	+	GFF1527	0.87	+0.5
125,282	-	GFF1527	0.87	-1.1
125,282	-	GFF1527	0.87	-0.4
125,339	-	GFF1527	0.89	-0.1
125,339	-	GFF1527	0.89	-0.1
125,339	-	GFF1527	0.89	-1.4
125,359	+			-0.0
125,420	-			-0.5
125,420	-			-1.0
125,420	-			-0.6
125,420	-			-1.3
125,428	+			-0.1
125,428	+			-0.6
125,428	+			-1.4
125,429	-			-0.3
125,446	+			+0.4
125,506	+			-1.3
125,506	+			+1.2
125,506	+			-0.6
125,507	-			+0.3
125,507	-			+1.2
125,549	-			+0.4
125,549	-			-0.2
125,549	-			-0.4
125,551	+			-0.3
125,551	+			-0.2
125,551	+			+0.7
125,551	+			-0.3
125,552	-			-0.9
125,587	+			+1.3
125,587	+			-1.3
125,587	+			-1.4
125,587	+			-0.2
125,951	-	GFF1528	0.28	+0.4
125,951	-	GFF1528	0.28	+1.6
125,951	-	GFF1528	0.28	-0.4
126,025	+	GFF1528	0.33	+0.2
126,026	-	GFF1528	0.34	-0.3
126,037	+	GFF1528	0.34	-0.7
126,037	+	GFF1528	0.34	+0.2
126,038	-	GFF1528	0.35	-1.2
126,050	+	GFF1528	0.35	-0.7
126,050	+	GFF1528	0.35	-0.4
126,050	+	GFF1528	0.35	+0.5
126,050	+	GFF1528	0.35	-1.1
126,050	+	GFF1528	0.35	+0.4
126,050	+	GFF1528	0.35	-0.5
126,051	-	GFF1528	0.36	-0.4
126,051	-	GFF1528	0.36	+0.4
126,051	-	GFF1528	0.36	+0.0
126,136	+	GFF1528	0.42	-0.8
126,136	+	GFF1528	0.42	-0.1
126,136	+	GFF1528	0.42	-0.5
126,136	+	GFF1528	0.42	+0.9
126,136	+	GFF1528	0.42	-1.7
126,136	+	GFF1528	0.42	-0.4
126,137	-	GFF1528	0.42	+0.3
126,137	-	GFF1528	0.42	+0.5
126,137	-	GFF1528	0.42	+0.2
126,137	-	GFF1528	0.42	+0.6
126,137	-	GFF1528	0.42	+0.5
126,137	-	GFF1528	0.42	-0.1
126,138	+	GFF1528	0.43	-0.3
126,138	+	GFF1528	0.43	+0.7
126,138	+	GFF1528	0.43	-1.4
126,138	+	GFF1528	0.43	+0.2
126,139	-	GFF1528	0.43	+0.4
126,258	-	GFF1528	0.52	-0.6
126,384	-	GFF1528	0.62	-0.2
126,493	+	GFF1528	0.71	-0.6
126,494	-	GFF1528	0.71	+0.3
126,506	-	GFF1528	0.72	+0.2
126,506	-	GFF1528	0.72	-1.1
126,506	-	GFF1528	0.72	-0.8
126,514	+	GFF1528	0.72	+1.2
126,515	-	GFF1528	0.73	-0.3
126,580	+	GFF1528	0.78	+0.2
126,580	+	GFF1528	0.78	+0.0
126,581	-	GFF1528	0.78	-1.4
126,581	-	GFF1528	0.78	+1.2

Or see this region's nucleotide sequence