Strain Fitness in Variovorax sp. SCN45 around GFF1514

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
106,938	+		GFF1513	0.23	-0.3
106,938	+		GFF1513	0.23	+1.2
106,938	+		GFF1513	0.23	+0.2
106,938	+		GFF1513	0.23	+0.5
106,938	+		GFF1513	0.23	+0.0
106,939	-		GFF1513	0.24	+0.8
106,939	-		GFF1513	0.24	+0.6
106,941	+		GFF1513	0.24	+1.0
106,941	+		GFF1513	0.24	-0.3
106,941	+		GFF1513	0.24	-0.0
106,941	+		GFF1513	0.24	+0.2
106,941	+		GFF1513	0.24	-0.3
106,941	+		GFF1513	0.24	-1.7
106,941	+		GFF1513	0.24	-0.3
106,941	+		GFF1513	0.24	-0.2
106,942	-		GFF1513	0.24	-0.5
106,942	-		GFF1513	0.24	+0.3
106,942	-		GFF1513	0.24	-0.4
106,942	-		GFF1513	0.24	-0.0
106,942	-		GFF1513	0.24	+0.2
106,942	-		GFF1513	0.24	-0.6
106,958	+		GFF1513	0.25	-0.0
106,974	+		GFF1513	0.27	-1.4
106,975	-		GFF1513	0.27	-0.6
106,975	-		GFF1513	0.27	+0.4
107,022	+		GFF1513	0.31	-2.1
107,022	+		GFF1513	0.31	-0.4
107,023	-		GFF1513	0.31	+0.4
107,202	+		GFF1513	0.48	-0.4
107,202	+		GFF1513	0.48	+1.7
107,202	+		GFF1513	0.48	+0.2
107,202	+		GFF1513	0.48	+1.3
107,202	+		GFF1513	0.48	-0.1
107,203	-		GFF1513	0.48	-1.1
107,203	-		GFF1513	0.48	+1.5
107,298	+		GFF1513	0.56	-1.4
107,298	+		GFF1513	0.56	-1.4
107,298	+		GFF1513	0.56	-0.2
107,298	+		GFF1513	0.56	-0.1
107,298	+		GFF1513	0.56	-2.3
107,298	+		GFF1513	0.56	-0.4
107,298	+		GFF1513	0.56	+0.4
107,298	+		GFF1513	0.56	-0.3
107,299	-		GFF1513	0.56	-0.1
107,299	-		GFF1513	0.56	+1.7
107,299	-		GFF1513	0.56	-1.1
107,299	-		GFF1513	0.56	+0.4
107,299	-		GFF1513	0.56	-1.1
107,299	-		GFF1513	0.56	-0.3
107,299	-		GFF1513	0.56	-0.5
107,299	-		GFF1513	0.56	-1.1
107,299	-		GFF1513	0.56	+0.0
107,299	-		GFF1513	0.56	-0.7
107,299	-		GFF1513	0.56	-1.1
107,352	+		GFF1513	0.61	-0.2
107,352	+		GFF1513	0.61	-0.6
107,353	-		GFF1513	0.61	+0.2
107,353	-		GFF1513	0.61	-0.3
107,353	-		GFF1513	0.61	+0.7
107,365	-		GFF1513	0.62	+0.3
107,367	+		GFF1513	0.63	-0.1
107,367	+		GFF1513	0.63	-0.4
107,368	-		GFF1513	0.63	-0.3
107,397	+		GFF1513	0.65	-0.2
107,397	+		GFF1513	0.65	-0.1
107,397	+		GFF1513	0.65	-0.6
107,398	-		GFF1513	0.65	-0.3
107,496	+		GFF1513	0.74	+0.2
107,497	-		GFF1513	0.74	-0.4
107,497	-		GFF1513	0.74	-0.8
107,497	-		GFF1513	0.74	-0.3
107,497	-		GFF1513	0.74	-0.1
107,623	-		GFF1513	0.86	+0.7
107,623	-		GFF1513	0.86	+0.7
107,625	+		GFF1513	0.86	+0.4
107,625	+		GFF1513	0.86	-0.2
107,625	+		GFF1513	0.86	+0.5
107,625	+		GFF1513	0.86	+0.4
107,775	+				+1.3
107,776	-				-0.8
107,800	+				-0.2
107,801	-				-1.2
107,804	+				-0.3
107,804	+				+3.9
107,805	-				-0.1
107,805	-				-0.5
107,805	-				-0.1
108,073	+		GFF1514	0.12	-0.5
108,073	+		GFF1514	0.12	-0.3
108,073	+		GFF1514	0.12	-0.1
108,073	+		GFF1514	0.12	+0.3
108,073	+		GFF1514	0.12	+0.2
108,073	+		GFF1514	0.12	+0.1
108,074	-		GFF1514	0.12	-0.7
108,074	-		GFF1514	0.12	+0.0
108,280	+		GFF1514	0.21	-0.6
108,433	+		GFF1514	0.28	-0.4
108,466	+		GFF1514	0.30	+0.4
108,484	+		GFF1514	0.30	+0.5
108,484	+		GFF1514	0.30	-1.3
108,485	-		GFF1514	0.30	+0.2
108,593	-		GFF1514	0.35	-0.0
108,682	+		GFF1514	0.39	-0.5
108,793	+		GFF1514	0.44	+0.2
108,793	+		GFF1514	0.44	+1.1
108,904	+		GFF1514	0.49	+0.3
108,905	-		GFF1514	0.49	-0.7
108,905	-		GFF1514	0.49	-1.0
108,905	-		GFF1514	0.49	-0.5
108,925	+		GFF1514	0.50	+0.4
108,925	+		GFF1514	0.50	-1.0
108,925	+		GFF1514	0.50	+0.2
108,925	+		GFF1514	0.50	-1.7
108,926	-		GFF1514	0.50	-0.2
108,926	-		GFF1514	0.50	-0.1
108,926	-		GFF1514	0.50	-0.4
108,926	-		GFF1514	0.50	-0.9
108,926	-		GFF1514	0.50	-0.1
108,926	-		GFF1514	0.50	-0.1
108,926	-		GFF1514	0.50	+0.2
108,928	+		GFF1514	0.50	-1.4
108,928	+		GFF1514	0.50	-0.6
108,928	+		GFF1514	0.50	-0.7
108,928	+		GFF1514	0.50	+0.1
108,928	+		GFF1514	0.50	+0.4
108,928	+		GFF1514	0.50	+0.7
108,929	-		GFF1514	0.50	-1.4
108,929	-		GFF1514	0.50	-2.0
108,929	-		GFF1514	0.50	+1.7
108,929	-		GFF1514	0.50	+0.7
108,929	-		GFF1514	0.50	-0.3
108,929	-		GFF1514	0.50	+0.9
108,929	-		GFF1514	0.50	-0.5
108,929	-		GFF1514	0.50	-1.7
109,117	+		GFF1514	0.59	-1.6
109,117	+		GFF1514	0.59	-0.7
109,117	+		GFF1514	0.59	-0.4
109,117	+		GFF1514	0.59	-0.6
109,117	+		GFF1514	0.59	-0.9
109,117	+		GFF1514	0.59	-0.3
109,117	+		GFF1514	0.59	-1.6
109,117	+		GFF1514	0.59	-1.4
109,117	+		GFF1514	0.59	+0.3
109,117	+		GFF1514	0.59	-1.9
109,117	+		GFF1514	0.59	-0.5
109,118	-		GFF1514	0.59	-0.4
109,118	-		GFF1514	0.59	-1.1
109,118	-		GFF1514	0.59	-0.8
109,118	-		GFF1514	0.59	+2.0
109,118	-		GFF1514	0.59	-0.3
109,135	+		GFF1514	0.60	+0.7
109,136	-		GFF1514	0.60	+0.2
109,211	-		GFF1514	0.63	+0.1
109,211	-		GFF1514	0.63	-0.8
109,211	-		GFF1514	0.63	-0.4
109,211	-		GFF1514	0.63	-0.4
109,234	+		GFF1514	0.64	+0.2
109,235	-		GFF1514	0.64	-0.6
109,249	+		GFF1514	0.65	-0.5
109,249	+		GFF1514	0.65	-0.4
109,249	+		GFF1514	0.65	+0.3
109,249	+		GFF1514	0.65	+0.4
109,250	-		GFF1514	0.65	+0.7
109,309	+		GFF1514	0.67	-0.8
109,309	+		GFF1514	0.67	+0.5
109,309	+		GFF1514	0.67	-0.9
109,309	+		GFF1514	0.67	-1.0
109,309	+		GFF1514	0.67	+0.1
109,309	+		GFF1514	0.67	-0.4
109,309	+		GFF1514	0.67	+0.1
109,309	+		GFF1514	0.67	+0.0
109,309	+		GFF1514	0.67	-0.3
109,309	+		GFF1514	0.67	-1.1
109,309	+		GFF1514	0.67	+0.2
109,309	+		GFF1514	0.67	+0.2
109,310	-		GFF1514	0.68	+0.7
109,310	-		GFF1514	0.68	-0.4
109,310	-		GFF1514	0.68	-0.4
109,310	-		GFF1514	0.68	-0.2
109,310	-		GFF1514	0.68	-1.1
109,310	-		GFF1514	0.68	-0.6
109,310	-		GFF1514	0.68	-0.6
109,310	-		GFF1514	0.68	-0.8
109,310	-		GFF1514	0.68	-1.4
109,534	+		GFF1514	0.78	+0.3
109,534	+		GFF1514	0.78	+1.7
109,535	-		GFF1514	0.78	-0.7
109,535	-		GFF1514	0.78	-0.4
109,555	+		GFF1514	0.79	-0.1
109,555	+		GFF1514	0.79	-0.2
109,556	-		GFF1514	0.79	-0.2
109,556	-		GFF1514	0.79	-0.4
109,556	-		GFF1514	0.79	-0.4
109,953	+				-0.8
109,953	+				+0.2
109,975	+				+0.1
109,976	-				-0.8
109,976	-				-2.0
109,981	+				-0.8
110,174	+				+0.4
110,487	-		GFF1515	0.26	-0.1
110,508	+		GFF1515	0.28	-0.2
110,509	-		GFF1515	0.28	-0.2
110,509	-		GFF1515	0.28	-0.3
110,509	-		GFF1515	0.28	-0.8
110,652	+		GFF1515	0.38	-0.6
110,652	+		GFF1515	0.38	-0.2
110,796	+		GFF1515	0.48	-0.7
110,796	+		GFF1515	0.48	-0.6
110,796	+		GFF1515	0.48	+0.7
110,797	-		GFF1515	0.48	-0.3
110,797	-		GFF1515	0.48	+0.5
110,797	-		GFF1515	0.48	-0.1
110,797	-		GFF1515	0.48	-0.5
110,797	-		GFF1515	0.48	-0.1