Strain Fitness in Variovorax sp. SCN45 around GFF1504

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1502 and GFF1503 are separated by 113 nucleotidesGFF1503 and GFF1504 are separated by 71 nucleotidesGFF1504 and GFF1505 overlap by 8 nucleotides GFF1502 - no description, at 94,348 to 94,464 GFF1502 GFF1503 - Dihydrofolate reductase homolog, at 94,578 to 95,210 GFF1503 GFF1504 - Alkylhydroperoxidase AhpD domain protein, at 95,282 to 96,454 GFF1504 GFF1505 - Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2), at 96,447 to 97,766 GFF1505 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 94.282 kb on + strandat 94.283 kb on - strandat 94.528 kb on + strandat 94.528 kb on + strandat 94.531 kb on - strandat 94.531 kb on - strandat 94.532 kb on + strandat 94.585 kb on - strandat 94.588 kb on + strandat 94.620 kb on + strandat 94.620 kb on + strandat 94.620 kb on + strandat 94.620 kb on + strandat 94.620 kb on + strandat 94.620 kb on + strandat 94.621 kb on - strandat 94.621 kb on - strandat 94.621 kb on - strandat 94.621 kb on - strandat 94.621 kb on - strandat 94.659 kb on + strand, within GFF1503at 94.659 kb on + strand, within GFF1503at 94.659 kb on - strand, within GFF1503at 94.716 kb on + strand, within GFF1503at 94.717 kb on - strand, within GFF1503at 94.884 kb on + strand, within GFF1503at 94.884 kb on + strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.885 kb on - strand, within GFF1503at 94.941 kb on + strand, within GFF1503at 94.942 kb on - strand, within GFF1503at 95.043 kb on + strand, within GFF1503at 95.043 kb on + strand, within GFF1503at 95.044 kb on - strand, within GFF1503at 95.196 kb on + strandat 95.197 kb on - strandat 95.197 kb on - strandat 95.584 kb on - strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.727 kb on + strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.845 kb on - strand, within GFF1504at 96.333 kb on + strand, within GFF1504at 96.333 kb on + strand, within GFF1504at 96.334 kb on - strand, within GFF1504at 96.602 kb on - strand, within GFF1505at 96.602 kb on - strand, within GFF1505at 96.626 kb on - strand, within GFF1505at 96.724 kb on + strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.946 kb on - strand, within GFF1505at 97.021 kb on + strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.190 kb on - strand, within GFF1505at 97.216 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.340 kb on - strand, within GFF1505

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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94,282 + -0.3
94,283 - +0.5
94,528 + +0.5
94,528 + +0.2
94,531 - -0.3
94,531 - -0.7
94,532 + -2.2
94,585 - -0.3
94,588 + -0.6
94,620 + -0.6
94,620 + +0.7
94,620 + +1.9
94,620 + +0.6
94,620 + -1.0
94,620 + -0.7
94,621 - -0.1
94,621 - -0.5
94,621 - +0.3
94,621 - -0.1
94,621 - +0.2
94,659 + GFF1503 0.13 +0.5
94,659 + GFF1503 0.13 +0.2
94,659 - GFF1503 0.13 -0.2
94,716 + GFF1503 0.22 +1.1
94,717 - GFF1503 0.22 +3.8
94,884 + GFF1503 0.48 -0.4
94,884 + GFF1503 0.48 +0.7
94,885 - GFF1503 0.48 -0.8
94,885 - GFF1503 0.48 -0.6
94,885 - GFF1503 0.48 +0.6
94,885 - GFF1503 0.48 -0.9
94,885 - GFF1503 0.48 -1.6
94,885 - GFF1503 0.48 +0.3
94,885 - GFF1503 0.48 +1.7
94,941 + GFF1503 0.57 +0.4
94,942 - GFF1503 0.58 -0.7
95,043 + GFF1503 0.73 +0.1
95,043 + GFF1503 0.73 -1.5
95,044 - GFF1503 0.74 -0.4
95,196 + -0.6
95,197 - +0.3
95,197 - +0.6
95,584 - GFF1504 0.26 -0.3
95,658 + GFF1504 0.32 +1.4
95,658 + GFF1504 0.32 -1.4
95,658 + GFF1504 0.32 -0.6
95,658 + GFF1504 0.32 +0.0
95,658 + GFF1504 0.32 +0.6
95,659 - GFF1504 0.32 -0.3
95,659 - GFF1504 0.32 -0.8
95,659 - GFF1504 0.32 -0.6
95,659 - GFF1504 0.32 -1.4
95,659 - GFF1504 0.32 -0.7
95,659 - GFF1504 0.32 +0.7
95,659 - GFF1504 0.32 -0.6
95,724 + GFF1504 0.38 +2.0
95,724 + GFF1504 0.38 +0.4
95,724 + GFF1504 0.38 -0.6
95,724 + GFF1504 0.38 -0.4
95,724 + GFF1504 0.38 -0.5
95,725 - GFF1504 0.38 -1.5
95,725 - GFF1504 0.38 +0.3
95,725 - GFF1504 0.38 -0.5
95,725 - GFF1504 0.38 +0.3
95,725 - GFF1504 0.38 -0.5
95,727 + GFF1504 0.38 -0.7
95,728 - GFF1504 0.38 -2.0
95,728 - GFF1504 0.38 -0.6
95,728 - GFF1504 0.38 -0.1
95,728 - GFF1504 0.38 +0.0
95,728 - GFF1504 0.38 -1.6
95,844 + GFF1504 0.48 -1.0
95,844 + GFF1504 0.48 -0.8
95,844 + GFF1504 0.48 -0.6
95,845 - GFF1504 0.48 +0.9
96,333 + GFF1504 0.90 -2.0
96,333 + GFF1504 0.90 -0.2
96,334 - GFF1504 0.90 -0.1
96,602 - GFF1505 0.12 +0.6
96,602 - GFF1505 0.12 +0.9
96,626 - GFF1505 0.14 -0.3
96,724 + GFF1505 0.21 -0.4
96,725 - GFF1505 0.21 +0.5
96,725 - GFF1505 0.21 +0.1
96,725 - GFF1505 0.21 -0.4
96,725 - GFF1505 0.21 +0.0
96,946 - GFF1505 0.38 -0.3
97,021 + GFF1505 0.43 -0.5
97,022 - GFF1505 0.44 -0.1
97,022 - GFF1505 0.44 +2.1
97,022 - GFF1505 0.44 +0.4
97,189 + GFF1505 0.56 +1.7
97,189 + GFF1505 0.56 -0.1
97,190 - GFF1505 0.56 +0.4
97,216 + GFF1505 0.58 +0.7
97,252 + GFF1505 0.61 +0.4
97,252 + GFF1505 0.61 -0.2
97,252 + GFF1505 0.61 +0.4
97,252 + GFF1505 0.61 -0.6
97,253 - GFF1505 0.61 -0.7
97,253 - GFF1505 0.61 -1.0
97,253 - GFF1505 0.61 +0.6
97,339 + GFF1505 0.68 -0.9
97,339 + GFF1505 0.68 -1.4
97,339 + GFF1505 0.68 -1.0
97,339 + GFF1505 0.68 -0.8
97,340 - GFF1505 0.68 -0.3

Or see this region's nucleotide sequence