Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1468 and GFF1469 are separated by 98 nucleotides GFF1469 and GFF1470 are separated by 153 nucleotides GFF1470 and GFF1471 are separated by 380 nucleotides GFF1471 and GFF1472 overlap by 8 nucleotides
GFF1468 - Transcriptional regulator, GntR family, at 60,581 to 61,318
GFF1468
GFF1469 - no description, at 61,417 to 61,530
GFF1469
GFF1470 - Putative transposase InsK for insertion sequence element IS150, at 61,684 to 61,812
GFF1470
GFF1471 - Uncharacterized MFS-type transporter, at 62,193 to 63,647
GFF1471
GFF1472 - Tricarboxylate transport protein TctC, at 63,640 to 64,608
GFF1472
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.199 kb on + strand, within GFF1468 at 61.200 kb on - strand, within GFF1468 at 61.200 kb on - strand, within GFF1468 at 61.253 kb on - strand at 61.317 kb on - strand at 61.389 kb on - strand at 61.397 kb on + strand at 61.397 kb on + strand at 61.397 kb on + strand at 61.398 kb on - strand at 61.448 kb on - strand, within GFF1469 at 61.538 kb on + strand at 61.539 kb on - strand at 61.604 kb on - strand at 61.668 kb on + strand at 61.678 kb on + strand at 61.678 kb on + strand at 61.679 kb on - strand at 61.679 kb on - strand at 61.687 kb on + strand at 61.687 kb on + strand at 61.687 kb on + strand at 61.688 kb on - strand at 61.693 kb on + strand at 61.694 kb on - strand at 61.723 kb on + strand, within GFF1470 at 61.723 kb on + strand, within GFF1470 at 61.723 kb on + strand, within GFF1470 at 61.724 kb on - strand, within GFF1470 at 61.724 kb on - strand, within GFF1470 at 61.813 kb on + strand at 61.813 kb on + strand at 61.815 kb on + strand at 61.815 kb on + strand at 61.815 kb on + strand at 61.815 kb on + strand at 61.815 kb on + strand at 61.816 kb on - strand at 61.816 kb on - strand at 61.816 kb on - strand at 61.816 kb on - strand at 61.816 kb on - strand at 61.816 kb on - strand at 61.819 kb on + strand at 61.819 kb on + strand at 61.820 kb on - strand at 61.820 kb on - strand at 61.820 kb on - strand at 61.884 kb on - strand at 61.966 kb on - strand at 61.996 kb on + strand at 62.047 kb on + strand at 62.047 kb on + strand at 62.047 kb on + strand at 62.050 kb on - strand at 62.058 kb on + strand at 62.094 kb on + strand at 62.136 kb on + strand at 62.137 kb on - strand at 62.139 kb on + strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.368 kb on + strand, within GFF1471 at 62.460 kb on - strand, within GFF1471 at 62.460 kb on - strand, within GFF1471 at 62.519 kb on + strand, within GFF1471 at 62.767 kb on + strand, within GFF1471 at 62.768 kb on - strand, within GFF1471 at 62.819 kb on + strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.993 kb on - strand, within GFF1471 at 63.303 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.541 kb on - strand at 63.687 kb on - strand at 64.072 kb on - strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.292 kb on + strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.615 kb on + strand at 64.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,199 + GFF1468 0.84 -1.4 61,200 - GFF1468 0.84 +0.9 61,200 - GFF1468 0.84 -0.0 61,253 - -0.4 61,317 - -0.5 61,389 - +0.5 61,397 + -2.6 61,397 + -0.4 61,397 + -0.1 61,398 - +0.0 61,448 - GFF1469 0.27 +0.3 61,538 + -0.4 61,539 - -0.5 61,604 - -0.4 61,668 + -0.7 61,678 + -1.2 61,678 + +0.3 61,679 - +0.2 61,679 - -0.8 61,687 + +1.0 61,687 + +0.1 61,687 + +0.4 61,688 - -0.9 61,693 + +0.4 61,694 - +1.4 61,723 + GFF1470 0.30 -1.3 61,723 + GFF1470 0.30 +0.4 61,723 + GFF1470 0.30 -1.0 61,724 - GFF1470 0.31 -0.3 61,724 - GFF1470 0.31 -0.2 61,813 + +0.6 61,813 + -0.3 61,815 + -0.6 61,815 + +0.7 61,815 + +0.3 61,815 + +0.9 61,815 + +0.9 61,816 - +0.3 61,816 - -0.3 61,816 - +0.2 61,816 - -0.2 61,816 - +0.4 61,816 - +0.5 61,819 + +0.3 61,819 + +1.4 61,820 - -0.0 61,820 - -0.2 61,820 - -0.3 61,884 - -0.1 61,966 - -0.3 61,996 + +1.1 62,047 + -0.2 62,047 + -0.2 62,047 + -0.0 62,050 - -0.5 62,058 + -0.6 62,094 + +0.2 62,136 + -1.3 62,137 - +0.3 62,139 + +0.2 62,140 - -0.1 62,140 - -0.4 62,140 - -1.2 62,368 + GFF1471 0.12 -0.1 62,460 - GFF1471 0.18 -1.3 62,460 - GFF1471 0.18 -1.8 62,519 + GFF1471 0.22 -0.3 62,767 + GFF1471 0.39 -0.1 62,768 - GFF1471 0.40 -0.2 62,819 + GFF1471 0.43 -0.3 62,820 - GFF1471 0.43 +1.3 62,820 - GFF1471 0.43 -0.4 62,820 - GFF1471 0.43 -2.3 62,993 - GFF1471 0.55 -0.4 63,303 + GFF1471 0.76 -1.6 63,472 + GFF1471 0.88 +0.1 63,472 + GFF1471 0.88 -1.5 63,472 + GFF1471 0.88 +0.1 63,472 + GFF1471 0.88 +1.2 63,473 - GFF1471 0.88 -0.8 63,473 - GFF1471 0.88 -0.5 63,473 - GFF1471 0.88 -1.0 63,541 - -0.3 63,687 - +1.7 64,072 - GFF1472 0.45 -0.5 64,211 + GFF1472 0.59 +0.6 64,211 + GFF1472 0.59 -0.3 64,212 - GFF1472 0.59 -0.5 64,212 - GFF1472 0.59 -0.1 64,292 + GFF1472 0.67 +0.0 64,293 - GFF1472 0.67 -1.1 64,293 - GFF1472 0.67 -1.5 64,307 + GFF1472 0.69 -0.5 64,307 + GFF1472 0.69 +1.0 64,307 + GFF1472 0.69 +0.7 64,308 - GFF1472 0.69 +0.2 64,308 - GFF1472 0.69 +0.1 64,308 - GFF1472 0.69 -0.7 64,308 - GFF1472 0.69 -0.0 64,615 + -0.1 64,616 - +1.4
Or see this region's nucleotide sequence