Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1413 and GFF1414 overlap by 11 nucleotides GFF1414 and GFF1415 are separated by 236 nucleotides GFF1415 and GFF1416 are separated by 196 nucleotides
GFF1413 - hypothetical protein, at 2,507 to 4,216
GFF1413
GFF1414 - Circadian clock protein KaiC, at 4,206 to 5,708
GFF1414
GFF1415 - Lactoylglutathione lyase and related lyases, at 5,945 to 6,313
GFF1415
GFF1416 - no description, at 6,510 to 6,923
GFF1416
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.273 kb on - strand, within GFF1413 at 3.505 kb on - strand, within GFF1413 at 3.810 kb on + strand, within GFF1413 at 3.973 kb on - strand, within GFF1413 at 4.053 kb on - strand at 4.442 kb on - strand, within GFF1414 at 4.442 kb on - strand, within GFF1414 at 4.528 kb on + strand, within GFF1414 at 4.529 kb on - strand, within GFF1414 at 4.675 kb on - strand, within GFF1414 at 5.515 kb on + strand, within GFF1414 at 5.515 kb on + strand, within GFF1414 at 5.515 kb on + strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.655 kb on + strand at 5.656 kb on - strand at 5.656 kb on - strand at 5.656 kb on - strand at 5.734 kb on - strand at 5.744 kb on + strand at 5.744 kb on + strand at 5.749 kb on + strand at 5.796 kb on + strand at 5.796 kb on + strand at 5.796 kb on + strand at 5.797 kb on - strand at 6.077 kb on - strand, within GFF1415 at 6.096 kb on - strand, within GFF1415 at 6.230 kb on + strand, within GFF1415 at 6.231 kb on - strand, within GFF1415 at 6.242 kb on + strand, within GFF1415 at 6.243 kb on - strand, within GFF1415 at 6.243 kb on - strand, within GFF1415 at 6.246 kb on - strand, within GFF1415 at 6.246 kb on - strand, within GFF1415 at 6.291 kb on + strand at 6.291 kb on + strand at 6.292 kb on - strand at 6.292 kb on - strand at 6.606 kb on + strand, within GFF1416 at 6.606 kb on + strand, within GFF1416 at 6.607 kb on - strand, within GFF1416
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 3,273 - GFF1413 0.45 -0.2 3,505 - GFF1413 0.58 +1.2 3,810 + GFF1413 0.76 +1.3 3,973 - GFF1413 0.86 +0.4 4,053 - +0.1 4,442 - GFF1414 0.16 +0.4 4,442 - GFF1414 0.16 -1.0 4,528 + GFF1414 0.21 -0.1 4,529 - GFF1414 0.21 +0.1 4,675 - GFF1414 0.31 +0.2 5,515 + GFF1414 0.87 -1.4 5,515 + GFF1414 0.87 -1.2 5,515 + GFF1414 0.87 -0.1 5,516 - GFF1414 0.87 -1.9 5,516 - GFF1414 0.87 +0.3 5,516 - GFF1414 0.87 -0.5 5,655 + -0.6 5,656 - +0.0 5,656 - -1.9 5,656 - -0.6 5,734 - -0.3 5,744 + -0.4 5,744 + -0.1 5,749 + -1.2 5,796 + -0.2 5,796 + +1.2 5,796 + +1.2 5,797 - -0.9 6,077 - GFF1415 0.36 +1.2 6,096 - GFF1415 0.41 +0.2 6,230 + GFF1415 0.77 -1.7 6,231 - GFF1415 0.78 +0.4 6,242 + GFF1415 0.80 +0.1 6,243 - GFF1415 0.81 -0.5 6,243 - GFF1415 0.81 +0.2 6,246 - GFF1415 0.82 -0.5 6,246 - GFF1415 0.82 +0.1 6,291 + -0.0 6,291 + -0.7 6,292 - +0.1 6,292 - -0.5 6,606 + GFF1416 0.23 +0.5 6,606 + GFF1416 0.23 +0.5 6,607 - GFF1416 0.23 -0.8
Or see this region's nucleotide sequence