Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1406 and GFF1407 are separated by 59 nucleotides GFF1407 and GFF1408 are separated by 49 nucleotides GFF1408 and GFF1409 are separated by 16 nucleotides GFF1409 and GFF1410 are separated by 83 nucleotides
GFF1406 - hypothetical protein, at 754,543 to 754,908
GFF1406
GFF1407 - hypothetical protein, at 754,968 to 755,483
GFF1407
GFF1408 - hypothetical protein, at 755,533 to 755,859
GFF1408
GFF1409 - hypothetical protein, at 755,876 to 756,814
GFF1409
GFF1410 - hypothetical protein, at 756,898 to 757,587
GFF1410
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 755.093 kb on - strand, within GFF1407 at 755.093 kb on - strand, within GFF1407 at 755.093 kb on - strand, within GFF1407 at 755.190 kb on + strand, within GFF1407 at 755.191 kb on - strand, within GFF1407 at 755.494 kb on + strand at 755.495 kb on - strand at 755.495 kb on - strand at 755.495 kb on - strand at 755.534 kb on + strand at 755.534 kb on + strand at 755.534 kb on + strand at 755.534 kb on + strand at 755.535 kb on - strand at 755.535 kb on - strand at 755.561 kb on + strand at 755.561 kb on + strand at 755.561 kb on + strand at 755.561 kb on + strand at 755.562 kb on - strand at 755.562 kb on - strand at 755.562 kb on - strand at 755.562 kb on - strand at 755.594 kb on + strand, within GFF1408 at 755.594 kb on + strand, within GFF1408 at 755.594 kb on + strand, within GFF1408 at 755.594 kb on + strand, within GFF1408 at 755.595 kb on - strand, within GFF1408 at 755.595 kb on - strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.675 kb on + strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.676 kb on - strand, within GFF1408 at 755.845 kb on + strand at 755.845 kb on + strand at 755.845 kb on + strand at 755.845 kb on + strand at 755.845 kb on + strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.846 kb on - strand at 755.887 kb on - strand at 755.887 kb on - strand at 756.297 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.591 kb on + strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.592 kb on - strand, within GFF1409 at 756.603 kb on + strand, within GFF1409 at 756.604 kb on - strand, within GFF1409 at 756.727 kb on + strand at 756.727 kb on + strand at 756.728 kb on - strand at 756.728 kb on - strand at 756.728 kb on - strand at 756.728 kb on - strand at 756.883 kb on + strand at 756.883 kb on + strand at 756.883 kb on + strand at 756.883 kb on + strand at 756.884 kb on - strand at 756.884 kb on - strand at 756.884 kb on - strand at 757.079 kb on + strand, within GFF1410 at 757.079 kb on + strand, within GFF1410 at 757.144 kb on - strand, within GFF1410 at 757.144 kb on - strand, within GFF1410 at 757.197 kb on + strand, within GFF1410 at 757.197 kb on + strand, within GFF1410 at 757.198 kb on - strand, within GFF1410 at 757.198 kb on - strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.220 kb on + strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.221 kb on - strand, within GFF1410 at 757.430 kb on + strand, within GFF1410 at 757.430 kb on + strand, within GFF1410 at 757.430 kb on + strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.431 kb on - strand, within GFF1410 at 757.647 kb on - strand at 757.739 kb on - strand at 757.750 kb on - strand at 757.750 kb on - strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.788 kb on + strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand at 757.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 755,093 - GFF1407 0.24 -1.3 755,093 - GFF1407 0.24 +0.5 755,093 - GFF1407 0.24 +1.1 755,190 + GFF1407 0.43 +0.1 755,191 - GFF1407 0.43 -0.2 755,494 + +0.7 755,495 - -0.1 755,495 - +1.0 755,495 - +0.8 755,534 + -0.0 755,534 + -0.5 755,534 + -0.1 755,534 + -0.3 755,535 - -0.5 755,535 - -0.5 755,561 + -0.5 755,561 + -0.9 755,561 + +0.5 755,561 + -1.2 755,562 - +0.3 755,562 - +0.6 755,562 - +0.1 755,562 - +0.1 755,594 + GFF1408 0.19 +0.1 755,594 + GFF1408 0.19 -0.6 755,594 + GFF1408 0.19 +0.5 755,594 + GFF1408 0.19 -0.3 755,595 - GFF1408 0.19 -0.2 755,595 - GFF1408 0.19 +1.4 755,675 + GFF1408 0.43 +0.6 755,675 + GFF1408 0.43 -1.7 755,675 + GFF1408 0.43 -0.4 755,675 + GFF1408 0.43 +0.3 755,675 + GFF1408 0.43 -0.0 755,675 + GFF1408 0.43 -0.1 755,675 + GFF1408 0.43 +0.1 755,675 + GFF1408 0.43 -1.1 755,675 + GFF1408 0.43 -1.0 755,675 + GFF1408 0.43 -1.0 755,675 + GFF1408 0.43 -1.0 755,675 + GFF1408 0.43 -0.2 755,675 + GFF1408 0.43 +0.2 755,675 + GFF1408 0.43 -0.5 755,675 + GFF1408 0.43 +1.2 755,676 - GFF1408 0.44 -1.8 755,676 - GFF1408 0.44 -1.7 755,676 - GFF1408 0.44 -0.4 755,676 - GFF1408 0.44 +2.4 755,676 - GFF1408 0.44 -0.3 755,676 - GFF1408 0.44 -0.3 755,676 - GFF1408 0.44 -1.4 755,676 - GFF1408 0.44 +0.1 755,676 - GFF1408 0.44 +0.4 755,676 - GFF1408 0.44 -0.5 755,676 - GFF1408 0.44 +1.1 755,676 - GFF1408 0.44 -0.2 755,676 - GFF1408 0.44 -0.7 755,676 - GFF1408 0.44 -0.4 755,676 - GFF1408 0.44 +1.5 755,676 - GFF1408 0.44 -0.3 755,676 - GFF1408 0.44 -0.4 755,676 - GFF1408 0.44 -0.7 755,845 + +1.3 755,845 + -1.1 755,845 + +0.7 755,845 + +1.1 755,845 + -0.0 755,846 - -1.0 755,846 - +0.3 755,846 - -0.6 755,846 - +0.2 755,846 - +0.3 755,846 - -0.4 755,846 - +0.5 755,846 - +0.1 755,846 - +1.8 755,846 - -0.8 755,887 - -0.2 755,887 - -0.3 756,297 + GFF1409 0.45 -0.1 756,591 + GFF1409 0.76 +0.0 756,591 + GFF1409 0.76 -0.0 756,591 + GFF1409 0.76 +0.9 756,591 + GFF1409 0.76 +0.3 756,591 + GFF1409 0.76 -0.8 756,591 + GFF1409 0.76 -0.2 756,592 - GFF1409 0.76 -0.2 756,592 - GFF1409 0.76 -1.0 756,592 - GFF1409 0.76 +1.0 756,592 - GFF1409 0.76 -0.5 756,592 - GFF1409 0.76 -0.4 756,592 - GFF1409 0.76 -0.3 756,603 + GFF1409 0.77 -0.4 756,604 - GFF1409 0.78 +4.2 756,727 + +0.0 756,727 + +1.0 756,728 - -0.3 756,728 - -0.0 756,728 - -0.3 756,728 - +0.8 756,883 + +0.0 756,883 + +0.8 756,883 + +0.2 756,883 + +0.0 756,884 - +0.4 756,884 - +1.4 756,884 - -0.7 757,079 + GFF1410 0.26 -0.0 757,079 + GFF1410 0.26 -0.3 757,144 - GFF1410 0.36 -0.9 757,144 - GFF1410 0.36 +0.1 757,197 + GFF1410 0.43 +1.5 757,197 + GFF1410 0.43 -0.9 757,198 - GFF1410 0.43 +0.1 757,198 - GFF1410 0.43 +0.5 757,220 + GFF1410 0.47 +0.0 757,220 + GFF1410 0.47 +0.5 757,220 + GFF1410 0.47 +0.2 757,220 + GFF1410 0.47 -0.9 757,220 + GFF1410 0.47 -0.9 757,220 + GFF1410 0.47 +0.2 757,220 + GFF1410 0.47 -1.1 757,221 - GFF1410 0.47 -0.2 757,221 - GFF1410 0.47 -0.4 757,221 - GFF1410 0.47 -0.5 757,221 - GFF1410 0.47 -0.7 757,221 - GFF1410 0.47 -0.5 757,221 - GFF1410 0.47 -0.2 757,221 - GFF1410 0.47 -0.4 757,221 - GFF1410 0.47 -0.3 757,430 + GFF1410 0.77 +0.8 757,430 + GFF1410 0.77 -0.2 757,430 + GFF1410 0.77 +0.2 757,431 - GFF1410 0.77 -1.1 757,431 - GFF1410 0.77 -0.1 757,431 - GFF1410 0.77 -0.7 757,431 - GFF1410 0.77 -0.5 757,431 - GFF1410 0.77 +0.2 757,431 - GFF1410 0.77 -0.1 757,431 - GFF1410 0.77 -1.2 757,647 - -0.9 757,739 - +0.2 757,750 - +0.6 757,750 - -0.8 757,788 + -0.3 757,788 + +0.7 757,788 + -0.2 757,788 + +0.2 757,788 + +0.3 757,788 + -0.0 757,788 + -0.5 757,788 + +0.8 757,788 + -0.4 757,788 + -0.7 757,788 + -1.0 757,788 + -0.3 757,788 + +0.7 757,788 + +0.1 757,788 + +4.4 757,788 + -1.1 757,788 + +0.8 757,788 + -0.2 757,788 + -1.1 757,789 - -2.0 757,789 - +0.1 757,789 - +0.2 757,789 - -1.6 757,789 - -1.5 757,789 - +1.2 757,789 - -0.2 757,789 - +0.4 757,789 - -0.3 757,789 - +0.8 757,789 - -0.0
Or see this region's nucleotide sequence