Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1392 and GFF1393 are separated by 643 nucleotides GFF1393 and GFF1394 are separated by 15 nucleotides GFF1394 and GFF1395 are separated by 3 nucleotides
GFF1392 - Monooxygenase, flavin-binding family, at 739,510 to 740,979
GFF1392
GFF1393 - hypothetical protein, at 741,623 to 742,501
GFF1393
GFF1394 - no description, at 742,517 to 743,341
GFF1394
GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872
GFF1395
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.623 kb on + strand, within GFF1392 at 740.623 kb on + strand, within GFF1392 at 740.623 kb on + strand, within GFF1392 at 740.623 kb on + strand, within GFF1392 at 740.624 kb on - strand, within GFF1392 at 740.624 kb on - strand, within GFF1392 at 740.638 kb on + strand, within GFF1392 at 740.638 kb on + strand, within GFF1392 at 740.638 kb on + strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.639 kb on - strand, within GFF1392 at 740.719 kb on + strand, within GFF1392 at 740.719 kb on + strand, within GFF1392 at 740.720 kb on - strand, within GFF1392 at 740.830 kb on + strand, within GFF1392 at 740.831 kb on - strand, within GFF1392 at 740.831 kb on - strand, within GFF1392 at 740.891 kb on - strand at 740.978 kb on - strand at 740.978 kb on - strand at 740.995 kb on + strand at 740.996 kb on - strand at 740.996 kb on - strand at 740.996 kb on - strand at 740.996 kb on - strand at 740.996 kb on - strand at 741.023 kb on + strand at 741.024 kb on - strand at 741.024 kb on - strand at 741.061 kb on + strand at 741.061 kb on + strand at 741.062 kb on - strand at 741.062 kb on - strand at 741.062 kb on - strand at 741.062 kb on - strand at 741.062 kb on - strand at 741.062 kb on - strand at 741.236 kb on + strand at 741.236 kb on + strand at 741.704 kb on + strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.912 kb on - strand, within GFF1393 at 741.958 kb on + strand, within GFF1393 at 741.959 kb on - strand, within GFF1393 at 742.155 kb on + strand, within GFF1393 at 742.156 kb on - strand, within GFF1393 at 742.513 kb on + strand at 742.513 kb on + strand at 742.513 kb on + strand at 742.514 kb on - strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.524 kb on - strand at 742.524 kb on - strand at 742.536 kb on - strand at 742.630 kb on + strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.699 kb on + strand, within GFF1394 at 742.700 kb on - strand, within GFF1394 at 742.973 kb on + strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 743.076 kb on + strand, within GFF1394 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 740,623 + GFF1392 0.76 -1.2 740,623 + GFF1392 0.76 +0.0 740,623 + GFF1392 0.76 -0.7 740,623 + GFF1392 0.76 +1.8 740,624 - GFF1392 0.76 -1.0 740,624 - GFF1392 0.76 +0.2 740,638 + GFF1392 0.77 -0.5 740,638 + GFF1392 0.77 -1.1 740,638 + GFF1392 0.77 -0.3 740,639 - GFF1392 0.77 -0.8 740,639 - GFF1392 0.77 -0.3 740,639 - GFF1392 0.77 -0.5 740,639 - GFF1392 0.77 -0.5 740,639 - GFF1392 0.77 +0.3 740,639 - GFF1392 0.77 -0.9 740,639 - GFF1392 0.77 +0.5 740,719 + GFF1392 0.82 -0.5 740,719 + GFF1392 0.82 -1.2 740,720 - GFF1392 0.82 -0.9 740,830 + GFF1392 0.90 -0.2 740,831 - GFF1392 0.90 -0.4 740,831 - GFF1392 0.90 +0.4 740,891 - +1.4 740,978 - -0.0 740,978 - -0.3 740,995 + +1.2 740,996 - -0.2 740,996 - +0.3 740,996 - -1.0 740,996 - +0.2 740,996 - +0.1 741,023 + -1.0 741,024 - +0.5 741,024 - -0.0 741,061 + +0.3 741,061 + +0.4 741,062 - -0.7 741,062 - -0.6 741,062 - +0.8 741,062 - +1.0 741,062 - +0.8 741,062 - +0.2 741,236 + +1.8 741,236 + -0.5 741,704 + +0.3 741,705 - +0.3 741,705 - -0.3 741,705 - +0.2 741,857 + GFF1393 0.27 +0.0 741,857 + GFF1393 0.27 +0.1 741,857 + GFF1393 0.27 +0.2 741,858 - GFF1393 0.27 +0.3 741,858 - GFF1393 0.27 +2.4 741,869 + GFF1393 0.28 -0.2 741,869 + GFF1393 0.28 +0.1 741,870 - GFF1393 0.28 -0.9 741,870 - GFF1393 0.28 -2.2 741,911 + GFF1393 0.33 -1.2 741,911 + GFF1393 0.33 +0.6 741,911 + GFF1393 0.33 +0.7 741,912 - GFF1393 0.33 -1.2 741,958 + GFF1393 0.38 +0.1 741,959 - GFF1393 0.38 -0.5 742,155 + GFF1393 0.61 -1.1 742,156 - GFF1393 0.61 +0.1 742,513 + -1.3 742,513 + +1.1 742,513 + -0.2 742,514 - -2.4 742,523 + -0.5 742,523 + +0.1 742,523 + +0.2 742,524 - -1.1 742,524 - -0.7 742,536 - -0.9 742,630 + GFF1394 0.14 -1.0 742,637 - GFF1394 0.15 -0.5 742,637 - GFF1394 0.15 -0.5 742,699 + GFF1394 0.22 -0.5 742,700 - GFF1394 0.22 +0.2 742,973 + GFF1394 0.55 +1.1 742,974 - GFF1394 0.55 +0.2 742,974 - GFF1394 0.55 +0.2 743,076 + GFF1394 0.68 -0.2 743,457 + GFF1395 0.21 -0.2 743,457 + GFF1395 0.21 +1.4 743,457 + GFF1395 0.21 +0.5 743,457 + GFF1395 0.21 +1.8 743,458 - GFF1395 0.21 +0.5 743,458 - GFF1395 0.21 +0.4 743,458 - GFF1395 0.21 +0.1 743,458 - GFF1395 0.21 -0.6 743,458 - GFF1395 0.21 +0.3
Or see this region's nucleotide sequence