Strain Fitness in Variovorax sp. SCN45 around GFF1351

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1350 and GFF1351 are separated by 98 nucleotidesGFF1351 and GFF1352 are separated by 47 nucleotides GFF1350 - Quinone oxidoreductase (EC 1.6.5.5), at 692,571 to 693,587 GFF1350 GFF1351 - Acyl-CoA dehydrogenase, at 693,686 to 695,326 GFF1351 GFF1352 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 695,374 to 696,312 GFF1352 Position (kb) 693 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.716 kb on - strand, within GFF1350at 692.716 kb on - strand, within GFF1350at 692.748 kb on + strand, within GFF1350at 692.748 kb on + strand, within GFF1350at 692.749 kb on - strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.871 kb on + strand, within GFF1350at 692.871 kb on + strand, within GFF1350at 692.872 kb on - strand, within GFF1350at 692.872 kb on - strand, within GFF1350at 692.983 kb on - strand, within GFF1350at 693.132 kb on + strand, within GFF1350at 693.132 kb on + strand, within GFF1350at 693.133 kb on - strand, within GFF1350at 693.133 kb on - strand, within GFF1350at 693.133 kb on - strand, within GFF1350at 693.133 kb on - strand, within GFF1350at 693.264 kb on + strand, within GFF1350at 693.264 kb on + strand, within GFF1350at 693.265 kb on - strand, within GFF1350at 693.265 kb on - strand, within GFF1350at 693.265 kb on - strand, within GFF1350at 693.509 kb on + strandat 693.679 kb on + strandat 693.679 kb on + strandat 693.734 kb on + strandat 693.734 kb on + strandat 693.734 kb on + strandat 693.734 kb on + strandat 693.734 kb on + strandat 693.735 kb on - strandat 693.735 kb on - strandat 693.944 kb on + strand, within GFF1351at 693.944 kb on + strand, within GFF1351at 693.945 kb on - strand, within GFF1351at 693.945 kb on - strand, within GFF1351at 694.094 kb on + strand, within GFF1351at 694.094 kb on + strand, within GFF1351at 694.095 kb on - strand, within GFF1351at 694.095 kb on - strand, within GFF1351at 694.134 kb on - strand, within GFF1351at 694.134 kb on - strand, within GFF1351at 694.310 kb on + strand, within GFF1351at 694.902 kb on - strand, within GFF1351at 694.940 kb on + strand, within GFF1351at 694.940 kb on + strand, within GFF1351at 694.941 kb on - strand, within GFF1351at 695.398 kb on + strandat 695.398 kb on + strandat 695.398 kb on + strandat 695.398 kb on + strandat 695.399 kb on - strandat 695.399 kb on - strandat 695.399 kb on - strandat 695.399 kb on - strandat 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.836 kb on + strand, within GFF1352at 695.837 kb on - strand, within GFF1352at 695.837 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.926 kb on + strand, within GFF1352at 695.927 kb on - strand, within GFF1352at 695.942 kb on - strand, within GFF1352at 696.223 kb on + strandat 696.224 kb on - strandat 696.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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692,697 + GFF1350 0.12 -0.7
692,697 + GFF1350 0.12 +0.8
692,697 + GFF1350 0.12 -0.0
692,697 + GFF1350 0.12 -0.1
692,697 + GFF1350 0.12 +0.2
692,697 + GFF1350 0.12 -0.1
692,698 - GFF1350 0.12 +0.0
692,698 - GFF1350 0.12 -0.1
692,698 - GFF1350 0.12 -1.9
692,698 - GFF1350 0.12 -0.1
692,698 - GFF1350 0.12 +0.8
692,698 - GFF1350 0.12 -0.6
692,698 - GFF1350 0.12 +0.5
692,698 - GFF1350 0.12 -0.5
692,698 - GFF1350 0.12 -0.9
692,715 + GFF1350 0.14 -0.0
692,715 + GFF1350 0.14 +0.2
692,715 + GFF1350 0.14 -0.3
692,716 - GFF1350 0.14 -0.0
692,716 - GFF1350 0.14 -0.2
692,748 + GFF1350 0.17 -0.7
692,748 + GFF1350 0.17 -0.9
692,749 - GFF1350 0.18 -0.2
692,826 + GFF1350 0.25 +0.8
692,826 + GFF1350 0.25 +0.2
692,826 + GFF1350 0.25 -0.3
692,827 - GFF1350 0.25 +0.2
692,827 - GFF1350 0.25 -0.2
692,827 - GFF1350 0.25 +1.8
692,827 - GFF1350 0.25 -1.2
692,827 - GFF1350 0.25 -0.3
692,871 + GFF1350 0.29 +0.1
692,871 + GFF1350 0.29 -0.8
692,872 - GFF1350 0.30 +1.2
692,872 - GFF1350 0.30 +0.8
692,983 - GFF1350 0.41 -0.5
693,132 + GFF1350 0.55 +1.6
693,132 + GFF1350 0.55 +0.5
693,133 - GFF1350 0.55 +0.3
693,133 - GFF1350 0.55 +1.5
693,133 - GFF1350 0.55 +1.2
693,133 - GFF1350 0.55 +1.0
693,264 + GFF1350 0.68 +1.1
693,264 + GFF1350 0.68 +0.1
693,265 - GFF1350 0.68 -1.8
693,265 - GFF1350 0.68 -1.0
693,265 - GFF1350 0.68 -0.2
693,509 + +0.3
693,679 + +0.2
693,679 + -1.2
693,734 + -0.2
693,734 + -1.8
693,734 + -0.0
693,734 + +0.4
693,734 + +0.8
693,735 - -0.7
693,735 - +0.0
693,944 + GFF1351 0.16 -0.1
693,944 + GFF1351 0.16 -0.8
693,945 - GFF1351 0.16 +1.5
693,945 - GFF1351 0.16 +0.2
694,094 + GFF1351 0.25 -0.8
694,094 + GFF1351 0.25 +0.4
694,095 - GFF1351 0.25 -0.5
694,095 - GFF1351 0.25 -0.4
694,134 - GFF1351 0.27 +0.5
694,134 - GFF1351 0.27 +1.8
694,310 + GFF1351 0.38 +1.0
694,902 - GFF1351 0.74 -1.2
694,940 + GFF1351 0.76 +0.9
694,940 + GFF1351 0.76 +0.6
694,941 - GFF1351 0.76 +0.1
695,398 + -0.1
695,398 + +0.2
695,398 + +1.1
695,398 + +2.2
695,399 - -0.7
695,399 - -0.7
695,399 - -0.6
695,399 - -0.5
695,560 + GFF1352 0.20 -0.2
695,560 + GFF1352 0.20 +1.5
695,560 + GFF1352 0.20 -0.1
695,560 + GFF1352 0.20 -0.6
695,560 + GFF1352 0.20 -0.1
695,560 + GFF1352 0.20 +0.3
695,561 - GFF1352 0.20 -1.1
695,561 - GFF1352 0.20 -0.4
695,561 - GFF1352 0.20 +0.1
695,561 - GFF1352 0.20 -1.4
695,561 - GFF1352 0.20 -0.9
695,561 - GFF1352 0.20 -0.3
695,561 - GFF1352 0.20 +0.0
695,561 - GFF1352 0.20 -0.5
695,836 + GFF1352 0.49 +0.0
695,837 - GFF1352 0.49 -1.4
695,837 - GFF1352 0.49 -0.2
695,846 - GFF1352 0.50 +0.2
695,846 - GFF1352 0.50 +0.5
695,846 - GFF1352 0.50 +0.0
695,926 + GFF1352 0.59 -0.9
695,927 - GFF1352 0.59 +0.1
695,942 - GFF1352 0.60 -0.2
696,223 + -1.5
696,224 - +0.8
696,287 - -1.0

Or see this region's nucleotide sequence