Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1345 and GFF1346 overlap by 1 nucleotides GFF1346 and GFF1347 are separated by 15 nucleotides GFF1347 and GFF1348 are separated by 28 nucleotides
GFF1345 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 688,824 to 690,677
GFF1345
GFF1346 - hypothetical protein, at 690,677 to 690,928
GFF1346
GFF1347 - Dabb, at 690,944 to 691,246
GFF1347
GFF1348 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 691,275 to 692,072
GFF1348
Position (kb) 690
691 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 689.700 kb on + strand, within GFF1345 at 689.823 kb on + strand, within GFF1345 at 689.965 kb on - strand, within GFF1345 at 689.965 kb on - strand, within GFF1345 at 689.994 kb on + strand, within GFF1345 at 689.994 kb on + strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 690.156 kb on + strand, within GFF1345 at 690.183 kb on + strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.579 kb on + strand at 690.580 kb on - strand at 690.591 kb on + strand at 690.591 kb on + strand at 690.782 kb on + strand, within GFF1346 at 690.782 kb on + strand, within GFF1346 at 690.782 kb on + strand, within GFF1346 at 690.783 kb on - strand, within GFF1346 at 690.783 kb on - strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.926 kb on + strand at 691.109 kb on + strand, within GFF1347 at 691.109 kb on + strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.161 kb on - strand, within GFF1347 at 691.235 kb on + strand at 691.235 kb on + strand at 691.235 kb on + strand at 691.236 kb on - strand at 691.650 kb on + strand, within GFF1348 at 691.684 kb on - strand, within GFF1348 at 691.773 kb on + strand, within GFF1348 at 691.774 kb on - strand, within GFF1348 at 691.774 kb on - strand, within GFF1348 at 691.836 kb on + strand, within GFF1348 at 691.836 kb on + strand, within GFF1348 at 691.836 kb on + strand, within GFF1348 at 691.837 kb on - strand, within GFF1348 at 691.837 kb on - strand, within GFF1348 at 691.837 kb on - strand, within GFF1348 at 691.837 kb on - strand, within GFF1348
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 689,700 + GFF1345 0.47 +1.2 689,823 + GFF1345 0.54 -0.5 689,965 - GFF1345 0.62 -0.2 689,965 - GFF1345 0.62 -0.5 689,994 + GFF1345 0.63 -1.7 689,994 + GFF1345 0.63 -0.2 689,995 - GFF1345 0.63 +0.3 689,995 - GFF1345 0.63 +0.9 689,995 - GFF1345 0.63 +0.2 689,995 - GFF1345 0.63 -0.5 690,156 + GFF1345 0.72 +0.4 690,183 + GFF1345 0.73 +0.7 690,184 - GFF1345 0.73 +1.2 690,184 - GFF1345 0.73 -1.1 690,184 - GFF1345 0.73 -0.8 690,456 + GFF1345 0.88 -0.8 690,456 + GFF1345 0.88 -0.5 690,456 + GFF1345 0.88 +0.3 690,457 - GFF1345 0.88 +1.2 690,457 - GFF1345 0.88 -1.0 690,457 - GFF1345 0.88 -0.5 690,457 - GFF1345 0.88 +1.8 690,457 - GFF1345 0.88 -1.9 690,579 + -0.0 690,580 - +0.6 690,591 + +0.1 690,591 + -0.5 690,782 + GFF1346 0.42 -0.3 690,782 + GFF1346 0.42 +0.6 690,782 + GFF1346 0.42 +0.3 690,783 - GFF1346 0.42 -0.9 690,783 - GFF1346 0.42 +1.2 690,899 + GFF1346 0.88 +1.8 690,899 + GFF1346 0.88 +0.1 690,899 + GFF1346 0.88 -0.2 690,899 + GFF1346 0.88 +0.7 690,900 - GFF1346 0.88 +1.3 690,900 - GFF1346 0.88 +0.8 690,900 - GFF1346 0.88 -0.5 690,900 - GFF1346 0.88 -0.5 690,900 - GFF1346 0.88 -1.5 690,900 - GFF1346 0.88 -0.2 690,900 - GFF1346 0.88 +0.2 690,900 - GFF1346 0.88 +1.2 690,926 + +1.4 691,109 + GFF1347 0.54 -0.4 691,109 + GFF1347 0.54 +0.5 691,110 - GFF1347 0.55 -0.1 691,110 - GFF1347 0.55 +1.8 691,110 - GFF1347 0.55 +0.5 691,161 - GFF1347 0.72 -0.3 691,235 + -0.9 691,235 + -0.7 691,235 + +0.4 691,236 - +2.8 691,650 + GFF1348 0.47 -1.2 691,684 - GFF1348 0.51 +1.1 691,773 + GFF1348 0.62 -0.8 691,774 - GFF1348 0.63 +1.4 691,774 - GFF1348 0.63 +0.0 691,836 + GFF1348 0.70 +0.8 691,836 + GFF1348 0.70 -0.0 691,836 + GFF1348 0.70 +0.3 691,837 - GFF1348 0.70 +0.5 691,837 - GFF1348 0.70 +0.3 691,837 - GFF1348 0.70 -0.0 691,837 - GFF1348 0.70 -0.9
Or see this region's nucleotide sequence