Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1343 and GFF1344 are separated by 46 nucleotides GFF1344 and GFF1345 are separated by 139 nucleotides
GFF1343 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 685,987 to 687,462
GFF1343
GFF1344 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 687,509 to 688,684
GFF1344
GFF1345 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 688,824 to 690,677
GFF1345
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 686.530 kb on + strand, within GFF1343 at 686.530 kb on + strand, within GFF1343 at 686.530 kb on + strand, within GFF1343 at 686.531 kb on - strand, within GFF1343 at 686.661 kb on - strand, within GFF1343 at 686.714 kb on - strand, within GFF1343 at 687.022 kb on - strand, within GFF1343 at 687.022 kb on - strand, within GFF1343 at 687.152 kb on - strand, within GFF1343 at 687.152 kb on - strand, within GFF1343 at 687.397 kb on + strand at 687.398 kb on - strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.419 kb on - strand at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 688.013 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.293 kb on - strand, within GFF1344 at 688.293 kb on - strand, within GFF1344 at 688.476 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.857 kb on + strand at 688.858 kb on - strand at 688.858 kb on - strand at 688.968 kb on + strand at 688.969 kb on - strand at 689.100 kb on + strand, within GFF1345 at 689.100 kb on + strand, within GFF1345 at 689.101 kb on - strand, within GFF1345 at 689.668 kb on - strand, within GFF1345
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 686,530 + GFF1343 0.37 +0.2 686,530 + GFF1343 0.37 +0.8 686,530 + GFF1343 0.37 +1.2 686,531 - GFF1343 0.37 -0.3 686,661 - GFF1343 0.46 -0.7 686,714 - GFF1343 0.49 -0.7 687,022 - GFF1343 0.70 +1.5 687,022 - GFF1343 0.70 -1.7 687,152 - GFF1343 0.79 +0.5 687,152 - GFF1343 0.79 -0.4 687,397 + -0.4 687,398 - +0.3 687,418 + +0.2 687,418 + +0.5 687,418 + +1.2 687,418 + -0.2 687,418 + -0.1 687,418 + -0.7 687,419 - -0.2 687,842 + GFF1344 0.28 +0.2 687,842 + GFF1344 0.28 -0.2 687,842 + GFF1344 0.28 +0.2 687,842 + GFF1344 0.28 +0.0 687,842 + GFF1344 0.28 -0.2 687,843 - GFF1344 0.28 +0.5 687,843 - GFF1344 0.28 +0.5 687,843 - GFF1344 0.28 +0.4 687,843 - GFF1344 0.28 -0.7 687,843 - GFF1344 0.28 -1.8 687,843 - GFF1344 0.28 -1.2 687,843 - GFF1344 0.28 -1.1 687,843 - GFF1344 0.28 +1.2 687,941 + GFF1344 0.37 +1.4 687,941 + GFF1344 0.37 -1.4 687,942 - GFF1344 0.37 -0.9 687,942 - GFF1344 0.37 -0.7 687,942 - GFF1344 0.37 -0.4 687,942 - GFF1344 0.37 -0.4 687,942 - GFF1344 0.37 -1.1 687,984 - GFF1344 0.40 +0.1 687,984 - GFF1344 0.40 +0.1 688,013 + GFF1344 0.43 +0.8 688,292 + GFF1344 0.67 -0.9 688,292 + GFF1344 0.67 +0.3 688,293 - GFF1344 0.67 -0.6 688,293 - GFF1344 0.67 -0.0 688,476 + GFF1344 0.82 +0.2 688,478 + GFF1344 0.82 -0.6 688,478 + GFF1344 0.82 -1.7 688,478 + GFF1344 0.82 -0.3 688,478 + GFF1344 0.82 -1.1 688,479 - GFF1344 0.82 +0.2 688,479 - GFF1344 0.82 +1.2 688,479 - GFF1344 0.82 -0.1 688,479 - GFF1344 0.82 -0.9 688,479 - GFF1344 0.82 +0.3 688,857 + -0.0 688,858 - +0.8 688,858 - +0.5 688,968 + -0.1 688,969 - +0.8 689,100 + GFF1345 0.15 -0.5 689,100 + GFF1345 0.15 +0.1 689,101 - GFF1345 0.15 -0.5 689,668 - GFF1345 0.46 -0.1
Or see this region's nucleotide sequence