Strain Fitness in Variovorax sp. SCN45 around GFF1341

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1339 and GFF1340 overlap by 4 nucleotidesGFF1340 and GFF1341 are separated by 1 nucleotidesGFF1341 and GFF1342 are separated by 150 nucleotides GFF1339 - ABC transporter, permease protein 2 RSc1752, at 680,907 to 682,235 GFF1339 GFF1340 - ABC transporter, ATP-binding protein 1 RSc1753, at 682,232 to 683,002 GFF1340 GFF1341 - ABC transporter, ATP-binding protein 2 RSc1754, at 683,004 to 683,699 GFF1341 GFF1342 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 683,850 to 685,955 GFF1342 Position (kb) 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.238 kb on + strandat 682.238 kb on + strandat 682.238 kb on + strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.451 kb on + strand, within GFF1340at 682.559 kb on + strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.680 kb on - strand, within GFF1340at 682.892 kb on + strand, within GFF1340at 682.958 kb on + strandat 682.958 kb on + strandat 682.959 kb on - strandat 682.959 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.035 kb on - strandat 683.211 kb on + strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.520 kb on + strand, within GFF1341at 683.521 kb on - strand, within GFF1341at 683.701 kb on - strandat 683.743 kb on + strandat 683.744 kb on - strandat 683.744 kb on - strandat 683.784 kb on - strandat 683.862 kb on + strandat 683.862 kb on + strandat 683.863 kb on - strandat 683.863 kb on - strandat 683.863 kb on - strandat 684.184 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.546 kb on + strand, within GFF1342

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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682,023 + GFF1339 0.84 +1.1
682,023 + GFF1339 0.84 -0.6
682,023 + GFF1339 0.84 -0.4
682,023 + GFF1339 0.84 -0.4
682,023 + GFF1339 0.84 +0.2
682,024 - GFF1339 0.84 -1.1
682,024 - GFF1339 0.84 +0.0
682,024 - GFF1339 0.84 -0.1
682,024 - GFF1339 0.84 +0.1
682,024 - GFF1339 0.84 -0.5
682,024 - GFF1339 0.84 +0.6
682,024 - GFF1339 0.84 -0.7
682,024 - GFF1339 0.84 -1.9
682,024 - GFF1339 0.84 -0.9
682,024 - GFF1339 0.84 -0.8
682,024 - GFF1339 0.84 -0.7
682,238 + -1.0
682,238 + -0.9
682,238 + -0.6
682,239 - +0.0
682,239 - -0.4
682,239 - -1.0
682,451 + GFF1340 0.28 -1.3
682,559 + GFF1340 0.42 +0.5
682,560 - GFF1340 0.43 -0.2
682,560 - GFF1340 0.43 -0.5
682,565 + GFF1340 0.43 -0.5
682,565 + GFF1340 0.43 -0.8
682,565 + GFF1340 0.43 -1.1
682,566 - GFF1340 0.43 +0.5
682,566 - GFF1340 0.43 +1.8
682,566 - GFF1340 0.43 -0.4
682,566 - GFF1340 0.43 -0.0
682,566 - GFF1340 0.43 +0.2
682,679 + GFF1340 0.58 -0.5
682,679 + GFF1340 0.58 -0.8
682,679 + GFF1340 0.58 -0.2
682,679 + GFF1340 0.58 +0.1
682,679 + GFF1340 0.58 -0.9
682,679 + GFF1340 0.58 -1.1
682,680 - GFF1340 0.58 -0.1
682,892 + GFF1340 0.86 +0.5
682,958 + +0.1
682,958 + -1.4
682,959 - -0.6
682,959 - +0.0
683,031 + +0.1
683,032 - -0.6
683,035 - -1.0
683,211 + GFF1341 0.30 -0.5
683,212 - GFF1341 0.30 +0.8
683,212 - GFF1341 0.30 -0.3
683,239 - GFF1341 0.34 -0.1
683,239 - GFF1341 0.34 -1.6
683,346 + GFF1341 0.49 -1.5
683,346 + GFF1341 0.49 +0.4
683,346 + GFF1341 0.49 -1.9
683,346 + GFF1341 0.49 +0.8
683,346 + GFF1341 0.49 +0.8
683,346 + GFF1341 0.49 -0.3
683,346 + GFF1341 0.49 -0.1
683,346 + GFF1341 0.49 -0.5
683,346 + GFF1341 0.49 -0.2
683,346 + GFF1341 0.49 -1.4
683,346 + GFF1341 0.49 -0.4
683,346 + GFF1341 0.49 +0.2
683,347 - GFF1341 0.49 +0.2
683,347 - GFF1341 0.49 +0.0
683,347 - GFF1341 0.49 -0.0
683,347 - GFF1341 0.49 -0.1
683,347 - GFF1341 0.49 -0.6
683,347 - GFF1341 0.49 -0.5
683,347 - GFF1341 0.49 +0.1
683,347 - GFF1341 0.49 +0.0
683,347 - GFF1341 0.49 -0.5
683,520 + GFF1341 0.74 +0.8
683,521 - GFF1341 0.74 -1.1
683,701 - +0.5
683,743 + -0.1
683,744 - -0.9
683,744 - +0.8
683,784 - -1.4
683,862 + -0.2
683,862 + -0.5
683,863 - +1.3
683,863 - +1.8
683,863 - +0.8
684,184 - GFF1342 0.16 -0.1
684,502 - GFF1342 0.31 -0.1
684,502 - GFF1342 0.31 -0.1
684,502 - GFF1342 0.31 -0.3
684,546 + GFF1342 0.33 -0.8

Or see this region's nucleotide sequence