Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1226 and GFF1227 are separated by 34 nucleotides GFF1227 and GFF1228 are separated by 146 nucleotides GFF1228 and GFF1229 are separated by 65 nucleotides
GFF1226 - Heavy-chain fibroin (Fragment), at 545,917 to 547,248
GFF1226
GFF1227 - no description, at 547,283 to 547,840
GFF1227
GFF1228 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 547,987 to 549,051
GFF1228
GFF1229 - 4-hydroxybutyrate coenzyme A transferase, at 549,117 to 550,415
GFF1229
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 547.482 kb on + strand, within GFF1227 at 547.482 kb on + strand, within GFF1227 at 547.482 kb on + strand, within GFF1227 at 547.483 kb on - strand, within GFF1227 at 547.483 kb on - strand, within GFF1227 at 547.566 kb on + strand, within GFF1227 at 547.566 kb on + strand, within GFF1227 at 547.580 kb on - strand, within GFF1227 at 547.659 kb on - strand, within GFF1227 at 547.874 kb on + strand at 547.875 kb on - strand at 547.983 kb on + strand at 547.983 kb on + strand at 547.983 kb on + strand at 547.984 kb on - strand at 547.984 kb on - strand at 548.589 kb on - strand, within GFF1228 at 548.591 kb on + strand, within GFF1228 at 548.592 kb on - strand, within GFF1228 at 548.592 kb on - strand, within GFF1228 at 549.136 kb on - strand at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.316 kb on - strand, within GFF1229 at 549.316 kb on - strand, within GFF1229 at 549.420 kb on + strand, within GFF1229 at 549.420 kb on + strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.510 kb on + strand, within GFF1229 at 549.511 kb on - strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.607 kb on - strand, within GFF1229 at 549.897 kb on + strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.948 kb on + strand, within GFF1229
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 547,482 + GFF1227 0.36 -1.5 547,482 + GFF1227 0.36 -0.1 547,482 + GFF1227 0.36 -0.2 547,483 - GFF1227 0.36 +0.8 547,483 - GFF1227 0.36 -1.3 547,566 + GFF1227 0.51 -1.2 547,566 + GFF1227 0.51 -0.8 547,580 - GFF1227 0.53 -0.9 547,659 - GFF1227 0.67 +1.8 547,874 + -0.6 547,875 - +0.6 547,983 + -1.3 547,983 + +0.2 547,983 + -1.5 547,984 - -0.6 547,984 - -0.2 548,589 - GFF1228 0.57 -0.1 548,591 + GFF1228 0.57 -0.5 548,592 - GFF1228 0.57 -1.0 548,592 - GFF1228 0.57 -1.8 549,136 - +0.6 549,309 + GFF1229 0.15 +0.7 549,309 + GFF1229 0.15 -0.3 549,309 + GFF1229 0.15 -0.6 549,309 + GFF1229 0.15 -0.9 549,315 + GFF1229 0.15 -0.7 549,315 + GFF1229 0.15 -1.0 549,315 + GFF1229 0.15 +0.1 549,315 + GFF1229 0.15 -0.0 549,316 - GFF1229 0.15 +1.0 549,316 - GFF1229 0.15 +1.5 549,420 + GFF1229 0.23 -0.0 549,420 + GFF1229 0.23 +2.0 549,421 - GFF1229 0.23 -0.1 549,421 - GFF1229 0.23 +0.2 549,421 - GFF1229 0.23 +2.1 549,421 - GFF1229 0.23 -0.6 549,421 - GFF1229 0.23 -0.0 549,421 - GFF1229 0.23 -0.1 549,421 - GFF1229 0.23 +0.6 549,510 + GFF1229 0.30 +1.1 549,511 - GFF1229 0.30 +0.3 549,537 + GFF1229 0.32 -0.2 549,537 + GFF1229 0.32 -0.2 549,538 - GFF1229 0.32 -0.9 549,538 - GFF1229 0.32 -0.0 549,538 - GFF1229 0.32 -0.6 549,607 - GFF1229 0.38 +0.5 549,897 + GFF1229 0.60 -0.2 549,898 - GFF1229 0.60 +0.5 549,898 - GFF1229 0.60 -0.5 549,898 - GFF1229 0.60 -0.4 549,898 - GFF1229 0.60 +0.0 549,898 - GFF1229 0.60 +0.8 549,948 + GFF1229 0.64 +0.7
Or see this region's nucleotide sequence