Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1219 and GFF1220 are separated by 73 nucleotides GFF1220 and GFF1221 overlap by 23 nucleotides GFF1221 and GFF1222 are separated by 9 nucleotides
GFF1219 - SAM-dependent methyltransferase, at 539,669 to 540,541
GFF1219
GFF1220 - Transcriptional regulator, MerR family, at 540,615 to 541,091
GFF1220
GFF1221 - KEGG: putative acetyltransferase , at 541,069 to 541,521
GFF1221
GFF1222 - Methylglyoxal synthase (EC 4.2.3.3), at 541,531 to 542,454
GFF1222
Position (kb) 541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.463 kb on + strand at 540.463 kb on + strand at 540.464 kb on - strand at 540.464 kb on - strand at 540.583 kb on - strand at 540.678 kb on + strand, within GFF1220 at 540.678 kb on + strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.679 kb on - strand, within GFF1220 at 540.681 kb on + strand, within GFF1220 at 540.681 kb on + strand, within GFF1220 at 540.682 kb on - strand, within GFF1220 at 541.071 kb on - strand at 541.115 kb on + strand, within GFF1221 at 541.116 kb on - strand, within GFF1221 at 541.142 kb on + strand, within GFF1221 at 541.143 kb on - strand, within GFF1221 at 541.143 kb on - strand, within GFF1221 at 541.157 kb on + strand, within GFF1221 at 541.439 kb on + strand, within GFF1221 at 541.439 kb on + strand, within GFF1221 at 541.439 kb on + strand, within GFF1221 at 541.440 kb on - strand, within GFF1221 at 541.440 kb on - strand, within GFF1221 at 541.454 kb on + strand, within GFF1221 at 541.532 kb on + strand at 541.532 kb on + strand at 541.533 kb on - strand at 541.552 kb on - strand at 542.090 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.123 kb on + strand, within GFF1222 at 542.124 kb on - strand, within GFF1222 at 542.124 kb on - strand, within GFF1222 at 542.124 kb on - strand, within GFF1222 at 542.344 kb on + strand, within GFF1222 at 542.345 kb on - strand, within GFF1222 at 542.345 kb on - strand, within GFF1222 at 542.489 kb on - strand at 542.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 540,461 + -0.2 540,461 + -1.8 540,461 + -0.4 540,461 + -0.2 540,461 + -0.3 540,461 + +0.4 540,461 + +0.8 540,461 + -0.0 540,461 + -0.5 540,461 + -0.5 540,461 + +1.3 540,461 + +0.4 540,462 - +1.1 540,462 - -0.2 540,462 - +0.4 540,462 - +0.8 540,462 - +0.6 540,462 - +0.3 540,462 - -0.4 540,462 - -0.0 540,462 - -1.2 540,462 - +0.1 540,462 - +1.1 540,462 - +0.1 540,462 - -0.1 540,462 - -0.0 540,462 - +0.5 540,462 - +0.4 540,462 - +0.2 540,462 - +0.0 540,462 - -0.4 540,463 + +0.8 540,463 + -0.2 540,464 - +0.5 540,464 - +0.1 540,583 - +0.8 540,678 + GFF1220 0.13 +1.4 540,678 + GFF1220 0.13 -0.0 540,679 - GFF1220 0.13 -0.5 540,679 - GFF1220 0.13 -0.3 540,679 - GFF1220 0.13 -0.5 540,679 - GFF1220 0.13 -0.1 540,679 - GFF1220 0.13 -0.8 540,679 - GFF1220 0.13 -0.6 540,681 + GFF1220 0.14 -0.4 540,681 + GFF1220 0.14 +0.6 540,682 - GFF1220 0.14 -0.9 541,071 - +0.6 541,115 + GFF1221 0.10 +1.6 541,116 - GFF1221 0.10 -0.6 541,142 + GFF1221 0.16 +0.7 541,143 - GFF1221 0.16 +0.2 541,143 - GFF1221 0.16 -0.2 541,157 + GFF1221 0.19 +0.2 541,439 + GFF1221 0.82 -0.1 541,439 + GFF1221 0.82 +2.8 541,439 + GFF1221 0.82 -0.2 541,440 - GFF1221 0.82 -1.9 541,440 - GFF1221 0.82 +0.0 541,454 + GFF1221 0.85 -0.5 541,532 + +0.1 541,532 + -0.2 541,533 - -0.8 541,552 - +0.4 542,090 + GFF1222 0.60 -0.8 542,123 + GFF1222 0.64 +1.5 542,123 + GFF1222 0.64 -1.3 542,123 + GFF1222 0.64 +1.3 542,123 + GFF1222 0.64 -0.8 542,123 + GFF1222 0.64 +0.8 542,123 + GFF1222 0.64 +0.5 542,124 - GFF1222 0.64 -0.2 542,124 - GFF1222 0.64 -0.1 542,124 - GFF1222 0.64 +1.1 542,344 + GFF1222 0.88 -0.2 542,345 - GFF1222 0.88 -0.9 542,345 - GFF1222 0.88 -0.7 542,489 - +0.4 542,489 - -0.8
Or see this region's nucleotide sequence