Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1181 and GFF1182 are separated by 147 nucleotides GFF1182 and GFF1183 are separated by 197 nucleotides GFF1183 and GFF1184 are separated by 342 nucleotides
GFF1181 - hypothetical protein, at 497,910 to 498,887
GFF1181
GFF1182 - FIG00347825: hypothetical protein, at 499,035 to 499,934
GFF1182
GFF1183 - Regulator of nucleoside diphosphate kinase, at 500,132 to 500,533
GFF1183
GFF1184 - UPF0060 membrane protein YnfA, at 500,876 to 501,208
GFF1184
Position (kb) 499
500 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 498.072 kb on + strand, within GFF1181 at 498.122 kb on + strand, within GFF1181 at 498.123 kb on - strand, within GFF1181 at 498.127 kb on + strand, within GFF1181 at 498.127 kb on + strand, within GFF1181 at 498.128 kb on - strand, within GFF1181 at 498.128 kb on - strand, within GFF1181 at 498.128 kb on - strand, within GFF1181 at 498.178 kb on + strand, within GFF1181 at 498.179 kb on - strand, within GFF1181 at 498.300 kb on + strand, within GFF1181 at 498.300 kb on + strand, within GFF1181 at 498.300 kb on + strand, within GFF1181 at 498.301 kb on - strand, within GFF1181 at 498.301 kb on - strand, within GFF1181 at 498.301 kb on - strand, within GFF1181 at 498.301 kb on - strand, within GFF1181 at 498.427 kb on + strand, within GFF1181 at 498.465 kb on + strand, within GFF1181 at 498.465 kb on + strand, within GFF1181 at 498.466 kb on - strand, within GFF1181 at 498.556 kb on + strand, within GFF1181 at 498.556 kb on + strand, within GFF1181 at 498.556 kb on + strand, within GFF1181 at 498.556 kb on + strand, within GFF1181 at 498.557 kb on - strand, within GFF1181 at 498.688 kb on + strand, within GFF1181 at 498.689 kb on - strand, within GFF1181 at 498.689 kb on - strand, within GFF1181 at 498.769 kb on + strand, within GFF1181 at 498.769 kb on + strand, within GFF1181 at 498.769 kb on + strand, within GFF1181 at 498.769 kb on + strand, within GFF1181 at 498.770 kb on - strand, within GFF1181 at 498.770 kb on - strand, within GFF1181 at 498.770 kb on - strand, within GFF1181 at 498.770 kb on - strand, within GFF1181 at 498.770 kb on - strand, within GFF1181 at 498.772 kb on + strand, within GFF1181 at 498.772 kb on + strand, within GFF1181 at 498.772 kb on + strand, within GFF1181 at 498.853 kb on + strand at 498.853 kb on + strand at 498.853 kb on + strand at 498.853 kb on + strand at 498.854 kb on - strand at 498.854 kb on - strand at 498.960 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.961 kb on + strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.962 kb on - strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.963 kb on + strand at 498.964 kb on - strand at 498.964 kb on - strand at 498.965 kb on + strand at 498.965 kb on + strand at 498.965 kb on + strand at 498.965 kb on + strand at 498.965 kb on + strand at 498.966 kb on - strand at 498.966 kb on - strand at 498.966 kb on - strand at 498.966 kb on - strand at 498.966 kb on - strand at 498.966 kb on - strand at 499.036 kb on + strand at 499.036 kb on + strand at 499.037 kb on - strand at 499.037 kb on - strand at 499.037 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.082 kb on - strand at 499.246 kb on + strand, within GFF1182 at 499.246 kb on + strand, within GFF1182 at 499.513 kb on + strand, within GFF1182 at 499.513 kb on + strand, within GFF1182 at 499.646 kb on - strand, within GFF1182 at 499.693 kb on + strand, within GFF1182 at 499.693 kb on + strand, within GFF1182 at 499.693 kb on + strand, within GFF1182 at 499.694 kb on - strand, within GFF1182 at 499.715 kb on - strand, within GFF1182 at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.142 kb on + strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.143 kb on - strand at 500.645 kb on + strand at 500.645 kb on + strand at 500.645 kb on + strand at 500.645 kb on + strand at 500.646 kb on - strand at 500.807 kb on + strand at 500.807 kb on + strand at 500.808 kb on - strand at 500.875 kb on + strand at 500.875 kb on + strand at 500.875 kb on + strand at 500.876 kb on - strand at 500.876 kb on - strand at 500.876 kb on - strand at 500.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 498,072 + GFF1181 0.17 +3.7 498,122 + GFF1181 0.22 -0.5 498,123 - GFF1181 0.22 +0.5 498,127 + GFF1181 0.22 +1.5 498,127 + GFF1181 0.22 -0.8 498,128 - GFF1181 0.22 -2.0 498,128 - GFF1181 0.22 -0.9 498,128 - GFF1181 0.22 +0.1 498,178 + GFF1181 0.27 -0.8 498,179 - GFF1181 0.28 -0.1 498,300 + GFF1181 0.40 +1.0 498,300 + GFF1181 0.40 -0.8 498,300 + GFF1181 0.40 -0.4 498,301 - GFF1181 0.40 +0.1 498,301 - GFF1181 0.40 +1.1 498,301 - GFF1181 0.40 +1.1 498,301 - GFF1181 0.40 -0.7 498,427 + GFF1181 0.53 +1.8 498,465 + GFF1181 0.57 -0.7 498,465 + GFF1181 0.57 +0.1 498,466 - GFF1181 0.57 -0.5 498,556 + GFF1181 0.66 +0.2 498,556 + GFF1181 0.66 +0.2 498,556 + GFF1181 0.66 -0.1 498,556 + GFF1181 0.66 -0.8 498,557 - GFF1181 0.66 -1.0 498,688 + GFF1181 0.80 +0.6 498,689 - GFF1181 0.80 -1.1 498,689 - GFF1181 0.80 +0.1 498,769 + GFF1181 0.88 -1.2 498,769 + GFF1181 0.88 -0.7 498,769 + GFF1181 0.88 -0.5 498,769 + GFF1181 0.88 -1.0 498,770 - GFF1181 0.88 +1.4 498,770 - GFF1181 0.88 +0.7 498,770 - GFF1181 0.88 -0.4 498,770 - GFF1181 0.88 -0.5 498,770 - GFF1181 0.88 +0.7 498,772 + GFF1181 0.88 +1.1 498,772 + GFF1181 0.88 +0.1 498,772 + GFF1181 0.88 -1.4 498,853 + -1.2 498,853 + -0.4 498,853 + +0.8 498,853 + -0.2 498,854 - -0.2 498,854 - -1.0 498,960 + -0.2 498,961 + +0.2 498,961 + -0.4 498,961 + -1.8 498,961 + +1.0 498,961 + +0.9 498,961 + -0.6 498,961 + -0.2 498,961 + -0.1 498,961 + -1.1 498,961 + -0.7 498,961 + +1.2 498,961 + +0.4 498,961 + +1.8 498,961 + +0.5 498,961 + -1.0 498,961 + -0.9 498,961 + -0.4 498,962 - -0.6 498,962 - -0.8 498,962 - -1.6 498,962 - -1.5 498,962 - +0.0 498,962 - +0.8 498,962 - -1.1 498,962 - -2.0 498,962 - -0.6 498,962 - -0.4 498,962 - +0.5 498,962 - -0.0 498,962 - +0.8 498,962 - -0.9 498,962 - +0.5 498,962 - +0.8 498,962 - -1.7 498,962 - +0.9 498,962 - +0.7 498,962 - +0.3 498,962 - -0.0 498,962 - -0.6 498,962 - -0.9 498,962 - +1.0 498,962 - -1.2 498,962 - +0.7 498,962 - -0.8 498,962 - -0.0 498,962 - -1.0 498,962 - +0.5 498,963 + -0.4 498,963 + +1.2 498,963 + -0.5 498,963 + -0.6 498,963 + -0.7 498,963 + +0.1 498,963 + -2.2 498,963 + -0.8 498,964 - -0.2 498,964 - -0.1 498,965 + -0.1 498,965 + -0.2 498,965 + -0.4 498,965 + +0.0 498,965 + +0.4 498,966 - -1.1 498,966 - +0.1 498,966 - +0.7 498,966 - +0.3 498,966 - +0.9 498,966 - +1.1 499,036 + -0.8 499,036 + +0.2 499,037 - -0.1 499,037 - -0.5 499,037 - +0.6 499,082 - +1.5 499,082 - -0.5 499,082 - +0.1 499,082 - +0.7 499,082 - -0.6 499,082 - -0.1 499,082 - +0.5 499,246 + GFF1182 0.23 -1.5 499,246 + GFF1182 0.23 -0.0 499,513 + GFF1182 0.53 -1.3 499,513 + GFF1182 0.53 -0.7 499,646 - GFF1182 0.68 -0.2 499,693 + GFF1182 0.73 -1.2 499,693 + GFF1182 0.73 -0.8 499,693 + GFF1182 0.73 -0.5 499,694 - GFF1182 0.73 +1.8 499,715 - GFF1182 0.76 -1.1 500,142 + -0.5 500,142 + +0.2 500,142 + -0.2 500,142 + +0.5 500,142 + -0.5 500,142 + -0.5 500,142 + -0.0 500,142 + -0.1 500,142 + -0.7 500,143 - -2.0 500,143 - -0.9 500,143 - -0.0 500,143 - +0.0 500,143 - -0.5 500,143 - -0.8 500,143 - -0.2 500,143 - +0.8 500,143 - -1.0 500,143 - +0.6 500,143 - -0.2 500,143 - -0.0 500,645 + -0.5 500,645 + +0.2 500,645 + +0.3 500,645 + +0.9 500,646 - -0.4 500,807 + -0.5 500,807 + -0.3 500,808 - +1.8 500,875 + -0.5 500,875 + -0.6 500,875 + +0.0 500,876 - -0.4 500,876 - -1.8 500,876 - -0.1 500,876 - -0.4
Or see this region's nucleotide sequence