Strain Fitness in Variovorax sp. SCN45 around GFF1119

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1118 and GFF1117 overlap by 2 nucleotidesGFF1117 and GFF1119 are separated by 2 nucleotidesGFF1119 and GFF1120 are separated by 65 nucleotidesGFF1120 and GFF1121 are separated by 22 nucleotides GFF1118 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 434,587 to 435,366 GFF1118 GFF1117 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 435,365 to 436,135 GFF1117 GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620 GFF1119 GFF1120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 436,686 to 437,141 GFF1120 GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474 GFF1121 Position (kb) 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 435.220 kb on + strand, within GFF1118at 435.220 kb on + strand, within GFF1118at 435.220 kb on + strand, within GFF1118at 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.379 kb on + strandat 435.380 kb on - strandat 435.381 kb on + strandat 435.381 kb on + strandat 435.419 kb on + strandat 435.419 kb on + strandat 435.419 kb on + strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.476 kb on + strand, within GFF1117at 435.476 kb on + strand, within GFF1117at 435.477 kb on - strand, within GFF1117at 435.639 kb on + strand, within GFF1117at 435.639 kb on + strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.785 kb on + strand, within GFF1117at 435.785 kb on + strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.812 kb on + strand, within GFF1117at 435.812 kb on + strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.843 kb on - strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 436.001 kb on + strand, within GFF1117at 436.002 kb on - strand, within GFF1117at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.191 kb on + strand, within GFF1119at 436.369 kb on + strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.384 kb on + strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.412 kb on + strand, within GFF1119at 436.719 kb on + strandat 436.719 kb on + strandat 436.719 kb on + strandat 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.969 kb on - strand, within GFF1120at 436.969 kb on - strand, within GFF1120at 437.139 kb on + strandat 437.165 kb on + strandat 437.165 kb on + strandat 437.165 kb on + strandat 437.349 kb on - strand, within GFF1121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
435,220 + GFF1118 0.81 +0.6
435,220 + GFF1118 0.81 +0.4
435,220 + GFF1118 0.81 +0.8
435,329 + -0.1
435,329 + +3.1
435,329 + -0.4
435,329 + +0.4
435,329 + -0.3
435,329 + +2.4
435,329 + -0.0
435,329 + +0.3
435,329 + -1.0
435,329 + +0.8
435,329 + +1.8
435,329 + -1.1
435,329 + -0.4
435,329 + +0.5
435,329 + -0.7
435,329 + -0.5
435,330 - -0.5
435,330 - -1.8
435,330 - -1.1
435,330 - +0.3
435,330 - -1.5
435,330 - +0.2
435,330 - -0.4
435,330 - -0.2
435,330 - +1.0
435,330 - -0.4
435,330 - +0.2
435,330 - +1.0
435,330 - -1.3
435,330 - +0.2
435,330 - -0.2
435,330 - -1.2
435,330 - +0.0
435,330 - -0.2
435,379 + +0.0
435,380 - -0.9
435,381 + -0.8
435,381 + -0.2
435,419 + -0.6
435,419 + -1.2
435,419 + -0.4
435,420 - +0.8
435,420 - -0.6
435,420 - +0.2
435,420 - -2.0
435,476 + GFF1117 0.14 -1.3
435,476 + GFF1117 0.14 -0.2
435,477 - GFF1117 0.15 -2.4
435,639 + GFF1117 0.36 -0.5
435,639 + GFF1117 0.36 -2.3
435,640 - GFF1117 0.36 +0.8
435,640 - GFF1117 0.36 -1.5
435,640 - GFF1117 0.36 -0.2
435,785 + GFF1117 0.54 -1.6
435,785 + GFF1117 0.54 -0.0
435,786 - GFF1117 0.55 -1.7
435,786 - GFF1117 0.55 -1.1
435,786 - GFF1117 0.55 -0.7
435,786 - GFF1117 0.55 -0.1
435,812 + GFF1117 0.58 +0.2
435,812 + GFF1117 0.58 -0.3
435,813 - GFF1117 0.58 +0.5
435,813 - GFF1117 0.58 +0.5
435,813 - GFF1117 0.58 +1.2
435,843 - GFF1117 0.62 -0.2
435,908 + GFF1117 0.70 +0.2
435,908 + GFF1117 0.70 +1.1
435,908 + GFF1117 0.70 -1.3
435,909 - GFF1117 0.71 +0.0
435,909 - GFF1117 0.71 -0.4
435,909 - GFF1117 0.71 -0.5
435,909 - GFF1117 0.71 +0.0
435,909 - GFF1117 0.71 -1.0
435,909 - GFF1117 0.71 +1.8
436,001 + GFF1117 0.82 -0.2
436,002 - GFF1117 0.83 -0.3
436,189 + GFF1119 0.11 -0.2
436,189 + GFF1119 0.11 -1.0
436,189 + GFF1119 0.11 -2.0
436,189 + GFF1119 0.11 -1.0
436,190 - GFF1119 0.11 +1.2
436,190 - GFF1119 0.11 -0.3
436,190 - GFF1119 0.11 -1.9
436,191 + GFF1119 0.11 -0.5
436,369 + GFF1119 0.48 -0.8
436,370 - GFF1119 0.48 -2.1
436,370 - GFF1119 0.48 -1.2
436,370 - GFF1119 0.48 +0.2
436,370 - GFF1119 0.48 -1.1
436,384 + GFF1119 0.51 -1.7
436,385 - GFF1119 0.51 -2.0
436,385 - GFF1119 0.51 -0.8
436,412 + GFF1119 0.57 -0.3
436,719 + -1.3
436,719 + +1.8
436,719 + -1.0
436,968 + GFF1120 0.62 -0.7
436,968 + GFF1120 0.62 +1.4
436,968 + GFF1120 0.62 -1.6
436,968 + GFF1120 0.62 +1.2
436,968 + GFF1120 0.62 -0.4
436,968 + GFF1120 0.62 +0.0
436,968 + GFF1120 0.62 -0.2
436,969 - GFF1120 0.62 +0.0
436,969 - GFF1120 0.62 +1.8
437,139 + -0.5
437,165 + +0.1
437,165 + -0.2
437,165 + -0.8
437,349 - GFF1121 0.14 -0.5

Or see this region's nucleotide sequence