Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1115 and GFF1116 are separated by 17 nucleotides GFF1116 and GFF1118 overlap by 4 nucleotides GFF1118 and GFF1117 overlap by 2 nucleotides
GFF1115 - Putative transmembrane protein, at 431,796 to 432,980
GFF1115
GFF1116 - Membrane-bound lytic murein transglycosylase D, at 432,998 to 434,590
GFF1116
GFF1118 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 434,587 to 435,366
GFF1118
GFF1117 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 435,365 to 436,135
GFF1117
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.324 kb on + strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.640 kb on - strand, within GFF1115 at 432.732 kb on + strand, within GFF1115 at 432.732 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.765 kb on + strand, within GFF1115 at 432.766 kb on - strand, within GFF1115 at 432.766 kb on - strand, within GFF1115 at 432.829 kb on - strand, within GFF1115 at 432.997 kb on - strand at 433.200 kb on + strand, within GFF1116 at 433.200 kb on + strand, within GFF1116 at 433.200 kb on + strand, within GFF1116 at 433.200 kb on + strand, within GFF1116 at 433.201 kb on - strand, within GFF1116 at 433.201 kb on - strand, within GFF1116 at 433.201 kb on - strand, within GFF1116 at 433.201 kb on - strand, within GFF1116 at 433.215 kb on + strand, within GFF1116 at 433.284 kb on + strand, within GFF1116 at 433.284 kb on + strand, within GFF1116 at 433.285 kb on - strand, within GFF1116 at 433.285 kb on - strand, within GFF1116 at 433.285 kb on - strand, within GFF1116 at 433.572 kb on + strand, within GFF1116 at 433.573 kb on - strand, within GFF1116 at 433.573 kb on - strand, within GFF1116 at 433.573 kb on - strand, within GFF1116 at 433.587 kb on + strand, within GFF1116 at 433.588 kb on - strand, within GFF1116 at 433.588 kb on - strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.776 kb on + strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.777 kb on - strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.863 kb on + strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.864 kb on - strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.899 kb on + strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.900 kb on - strand, within GFF1116 at 433.968 kb on + strand, within GFF1116 at 433.968 kb on + strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 433.969 kb on - strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.007 kb on + strand, within GFF1116 at 434.008 kb on - strand, within GFF1116 at 434.022 kb on + strand, within GFF1116 at 434.022 kb on + strand, within GFF1116 at 434.023 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.182 kb on - strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.247 kb on + strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.248 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.281 kb on - strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.298 kb on + strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.299 kb on - strand, within GFF1116 at 434.347 kb on - strand, within GFF1116 at 434.455 kb on - strand at 434.792 kb on + strand, within GFF1118 at 434.792 kb on + strand, within GFF1118 at 434.792 kb on + strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.793 kb on - strand, within GFF1118 at 434.844 kb on + strand, within GFF1118 at 434.845 kb on - strand, within GFF1118 at 434.845 kb on - strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.855 kb on + strand, within GFF1118 at 434.856 kb on - strand, within GFF1118 at 434.856 kb on - strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.023 kb on + strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.024 kb on - strand, within GFF1118 at 435.043 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.053 kb on - strand, within GFF1118 at 435.116 kb on + strand, within GFF1118 at 435.116 kb on + strand, within GFF1118 at 435.117 kb on - strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.220 kb on + strand, within GFF1118 at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.329 kb on + strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.330 kb on - strand at 435.379 kb on + strand at 435.380 kb on - strand at 435.381 kb on + strand at 435.381 kb on + strand at 435.419 kb on + strand at 435.419 kb on + strand at 435.419 kb on + strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.420 kb on - strand at 435.476 kb on + strand, within GFF1117 at 435.476 kb on + strand, within GFF1117 at 435.477 kb on - strand, within GFF1117
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 432,324 + GFF1115 0.45 -0.3 432,325 - GFF1115 0.45 -1.1 432,325 - GFF1115 0.45 +0.0 432,558 + GFF1115 0.64 -0.8 432,558 + GFF1115 0.64 -0.6 432,558 + GFF1115 0.64 -0.2 432,559 - GFF1115 0.64 -0.1 432,559 - GFF1115 0.64 +0.3 432,559 - GFF1115 0.64 +0.1 432,639 + GFF1115 0.71 -0.5 432,639 + GFF1115 0.71 -0.0 432,639 + GFF1115 0.71 -0.2 432,639 + GFF1115 0.71 -0.2 432,640 - GFF1115 0.71 +0.8 432,732 + GFF1115 0.79 -0.8 432,732 + GFF1115 0.79 +1.4 432,765 + GFF1115 0.82 +0.2 432,765 + GFF1115 0.82 -2.1 432,765 + GFF1115 0.82 +0.8 432,765 + GFF1115 0.82 -0.8 432,765 + GFF1115 0.82 +0.9 432,765 + GFF1115 0.82 -0.1 432,766 - GFF1115 0.82 -1.0 432,766 - GFF1115 0.82 +0.5 432,829 - GFF1115 0.87 -0.3 432,997 - -0.4 433,200 + GFF1116 0.13 -0.8 433,200 + GFF1116 0.13 -0.4 433,200 + GFF1116 0.13 -0.1 433,200 + GFF1116 0.13 -1.3 433,201 - GFF1116 0.13 +0.0 433,201 - GFF1116 0.13 -0.5 433,201 - GFF1116 0.13 -0.7 433,201 - GFF1116 0.13 -0.6 433,215 + GFF1116 0.14 +0.4 433,284 + GFF1116 0.18 -0.6 433,284 + GFF1116 0.18 -0.9 433,285 - GFF1116 0.18 -0.2 433,285 - GFF1116 0.18 +0.5 433,285 - GFF1116 0.18 -0.4 433,572 + GFF1116 0.36 +0.0 433,573 - GFF1116 0.36 -1.0 433,573 - GFF1116 0.36 -2.1 433,573 - GFF1116 0.36 +0.4 433,587 + GFF1116 0.37 -0.5 433,588 - GFF1116 0.37 -1.4 433,588 - GFF1116 0.37 -0.3 433,776 + GFF1116 0.49 -0.3 433,776 + GFF1116 0.49 -0.5 433,776 + GFF1116 0.49 -0.5 433,776 + GFF1116 0.49 +0.8 433,777 - GFF1116 0.49 -0.5 433,777 - GFF1116 0.49 -1.3 433,777 - GFF1116 0.49 +0.1 433,777 - GFF1116 0.49 -1.1 433,777 - GFF1116 0.49 -0.7 433,863 + GFF1116 0.54 +0.4 433,863 + GFF1116 0.54 -0.2 433,863 + GFF1116 0.54 +0.4 433,863 + GFF1116 0.54 +0.5 433,863 + GFF1116 0.54 -0.2 433,863 + GFF1116 0.54 -0.7 433,863 + GFF1116 0.54 -0.9 433,863 + GFF1116 0.54 -1.0 433,863 + GFF1116 0.54 -1.1 433,863 + GFF1116 0.54 -0.8 433,864 - GFF1116 0.54 -0.5 433,864 - GFF1116 0.54 -0.0 433,864 - GFF1116 0.54 -0.4 433,864 - GFF1116 0.54 +0.4 433,864 - GFF1116 0.54 -0.2 433,864 - GFF1116 0.54 +1.2 433,864 - GFF1116 0.54 +0.3 433,864 - GFF1116 0.54 -0.6 433,864 - GFF1116 0.54 +0.2 433,864 - GFF1116 0.54 -0.5 433,864 - GFF1116 0.54 -0.6 433,864 - GFF1116 0.54 +0.3 433,864 - GFF1116 0.54 -0.5 433,864 - GFF1116 0.54 -0.0 433,864 - GFF1116 0.54 -1.6 433,899 + GFF1116 0.57 +0.2 433,899 + GFF1116 0.57 -1.0 433,899 + GFF1116 0.57 +0.3 433,899 + GFF1116 0.57 +0.1 433,899 + GFF1116 0.57 +1.5 433,900 - GFF1116 0.57 -0.4 433,900 - GFF1116 0.57 -0.7 433,900 - GFF1116 0.57 -0.1 433,900 - GFF1116 0.57 +0.8 433,968 + GFF1116 0.61 -0.1 433,968 + GFF1116 0.61 -0.3 433,969 - GFF1116 0.61 -0.1 433,969 - GFF1116 0.61 -0.4 433,969 - GFF1116 0.61 +0.6 434,007 + GFF1116 0.63 +0.2 434,007 + GFF1116 0.63 -0.2 434,007 + GFF1116 0.63 -0.6 434,008 - GFF1116 0.63 -1.2 434,022 + GFF1116 0.64 -2.6 434,022 + GFF1116 0.64 +0.5 434,023 - GFF1116 0.64 +0.2 434,182 - GFF1116 0.74 -0.2 434,182 - GFF1116 0.74 +0.1 434,182 - GFF1116 0.74 +2.4 434,182 - GFF1116 0.74 +0.0 434,182 - GFF1116 0.74 -0.2 434,182 - GFF1116 0.74 -0.6 434,247 + GFF1116 0.78 -0.2 434,247 + GFF1116 0.78 +0.2 434,247 + GFF1116 0.78 +0.0 434,247 + GFF1116 0.78 +0.9 434,247 + GFF1116 0.78 -1.0 434,247 + GFF1116 0.78 -3.0 434,247 + GFF1116 0.78 -0.1 434,247 + GFF1116 0.78 -1.0 434,247 + GFF1116 0.78 -1.1 434,247 + GFF1116 0.78 +0.4 434,247 + GFF1116 0.78 -0.5 434,247 + GFF1116 0.78 -1.1 434,247 + GFF1116 0.78 -0.2 434,247 + GFF1116 0.78 -1.7 434,247 + GFF1116 0.78 +0.8 434,247 + GFF1116 0.78 +0.1 434,248 - GFF1116 0.78 -1.2 434,248 - GFF1116 0.78 -1.0 434,248 - GFF1116 0.78 -0.2 434,248 - GFF1116 0.78 -1.0 434,248 - GFF1116 0.78 -0.8 434,248 - GFF1116 0.78 -0.2 434,281 - GFF1116 0.81 -1.3 434,281 - GFF1116 0.81 +1.0 434,281 - GFF1116 0.81 +0.3 434,281 - GFF1116 0.81 +1.8 434,281 - GFF1116 0.81 +0.2 434,298 + GFF1116 0.82 +0.0 434,298 + GFF1116 0.82 +1.8 434,298 + GFF1116 0.82 -0.3 434,298 + GFF1116 0.82 -1.6 434,298 + GFF1116 0.82 +1.2 434,299 - GFF1116 0.82 -0.2 434,299 - GFF1116 0.82 -0.1 434,299 - GFF1116 0.82 -0.4 434,347 - GFF1116 0.85 +0.0 434,455 - -0.8 434,792 + GFF1118 0.26 +1.2 434,792 + GFF1118 0.26 +0.8 434,792 + GFF1118 0.26 -1.5 434,793 - GFF1118 0.26 +0.2 434,793 - GFF1118 0.26 -1.3 434,793 - GFF1118 0.26 -2.3 434,844 + GFF1118 0.33 +0.7 434,845 - GFF1118 0.33 -0.8 434,845 - GFF1118 0.33 +0.0 434,855 + GFF1118 0.34 -0.1 434,855 + GFF1118 0.34 +1.5 434,855 + GFF1118 0.34 +0.3 434,856 - GFF1118 0.34 +0.5 434,856 - GFF1118 0.34 -1.3 435,023 + GFF1118 0.56 +0.4 435,023 + GFF1118 0.56 +0.1 435,023 + GFF1118 0.56 +0.5 435,023 + GFF1118 0.56 -0.0 435,024 - GFF1118 0.56 -0.3 435,024 - GFF1118 0.56 +0.1 435,024 - GFF1118 0.56 +1.2 435,043 - GFF1118 0.58 +0.0 435,053 - GFF1118 0.60 +0.3 435,053 - GFF1118 0.60 +0.2 435,053 - GFF1118 0.60 -0.5 435,116 + GFF1118 0.68 -0.2 435,116 + GFF1118 0.68 +0.1 435,117 - GFF1118 0.68 -0.7 435,220 + GFF1118 0.81 +0.6 435,220 + GFF1118 0.81 +0.4 435,220 + GFF1118 0.81 +0.8 435,329 + -0.1 435,329 + +3.1 435,329 + -0.4 435,329 + +0.4 435,329 + -0.3 435,329 + +2.4 435,329 + -0.0 435,329 + +0.3 435,329 + -1.0 435,329 + +0.8 435,329 + +1.8 435,329 + -1.1 435,329 + -0.4 435,329 + +0.5 435,329 + -0.7 435,329 + -0.5 435,330 - -0.5 435,330 - -1.8 435,330 - -1.1 435,330 - +0.3 435,330 - -1.5 435,330 - +0.2 435,330 - -0.4 435,330 - -0.2 435,330 - +1.0 435,330 - -0.4 435,330 - +0.2 435,330 - +1.0 435,330 - -1.3 435,330 - +0.2 435,330 - -0.2 435,330 - -1.2 435,330 - +0.0 435,330 - -0.2 435,379 + +0.0 435,380 - -0.9 435,381 + -0.8 435,381 + -0.2 435,419 + -0.6 435,419 + -1.2 435,419 + -0.4 435,420 - +0.8 435,420 - -0.6 435,420 - +0.2 435,420 - -2.0 435,476 + GFF1117 0.14 -1.3 435,476 + GFF1117 0.14 -0.2 435,477 - GFF1117 0.15 -2.4
Or see this region's nucleotide sequence