Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1105 and GFF1106 overlap by 4 nucleotides GFF1106 and GFF1107 overlap by 4 nucleotides
GFF1105 - Helicase, at 418,130 to 420,694
GFF1105
GFF1106 - UvrD/REP helicase, at 420,691 to 423,951
GFF1106
GFF1107 - NAD(FAD)-utilizing dehydrogenases, at 423,948 to 425,186
GFF1107
Position (kb) 420
421
422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 419.936 kb on + strand, within GFF1105 at 419.936 kb on + strand, within GFF1105 at 419.937 kb on - strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.706 kb on + strand at 420.707 kb on - strand at 420.746 kb on - strand at 421.052 kb on - strand, within GFF1106 at 421.171 kb on + strand, within GFF1106 at 421.172 kb on - strand, within GFF1106 at 421.264 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.268 kb on - strand, within GFF1106 at 421.390 kb on + strand, within GFF1106 at 421.717 kb on + strand, within GFF1106 at 422.023 kb on + strand, within GFF1106 at 422.023 kb on + strand, within GFF1106 at 423.259 kb on + strand, within GFF1106 at 423.259 kb on + strand, within GFF1106 at 423.260 kb on - strand, within GFF1106 at 423.887 kb on - strand at 423.938 kb on + strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.338 kb on - strand, within GFF1107 at 424.542 kb on - strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.705 kb on - strand, within GFF1107 at 424.705 kb on - strand, within GFF1107 at 424.877 kb on + strand, within GFF1107 at 424.877 kb on + strand, within GFF1107 at 424.878 kb on - strand, within GFF1107 at 424.878 kb on - strand, within GFF1107
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 419,936 + GFF1105 0.70 +0.4 419,936 + GFF1105 0.70 -1.3 419,937 - GFF1105 0.70 -2.0 420,371 + GFF1105 0.87 +0.8 420,371 + GFF1105 0.87 -0.5 420,706 + -1.6 420,707 - -1.5 420,746 - +0.2 421,052 - GFF1106 0.11 +0.2 421,171 + GFF1106 0.15 -1.0 421,172 - GFF1106 0.15 +0.5 421,264 + GFF1106 0.18 -0.5 421,267 + GFF1106 0.18 -1.2 421,267 + GFF1106 0.18 +1.2 421,268 - GFF1106 0.18 +1.2 421,390 + GFF1106 0.21 -2.3 421,717 + GFF1106 0.31 -0.8 422,023 + GFF1106 0.41 -1.3 422,023 + GFF1106 0.41 -1.3 423,259 + GFF1106 0.79 -1.3 423,259 + GFF1106 0.79 +1.2 423,260 - GFF1106 0.79 +0.2 423,887 - +1.4 423,938 + +0.5 424,013 - +0.9 424,013 - +0.1 424,013 - -0.8 424,013 - -0.3 424,013 - +0.4 424,044 + -0.9 424,044 + -1.1 424,044 + -0.0 424,044 + +0.3 424,044 + +0.2 424,044 + -0.0 424,045 - -0.2 424,045 - +2.8 424,045 - +2.0 424,045 - -0.0 424,337 + GFF1107 0.31 +1.8 424,337 + GFF1107 0.31 -0.3 424,337 + GFF1107 0.31 +0.6 424,337 + GFF1107 0.31 +0.3 424,337 + GFF1107 0.31 -0.5 424,338 - GFF1107 0.31 +0.3 424,542 - GFF1107 0.48 +0.4 424,704 + GFF1107 0.61 -0.2 424,704 + GFF1107 0.61 -0.6 424,704 + GFF1107 0.61 +0.2 424,704 + GFF1107 0.61 -0.3 424,704 + GFF1107 0.61 -0.2 424,704 + GFF1107 0.61 +0.1 424,704 + GFF1107 0.61 +1.6 424,705 - GFF1107 0.61 -0.6 424,705 - GFF1107 0.61 -1.1 424,877 + GFF1107 0.75 +0.7 424,877 + GFF1107 0.75 -1.2 424,878 - GFF1107 0.75 -0.2 424,878 - GFF1107 0.75 -0.3
Or see this region's nucleotide sequence