Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1103 and GFF1104 are separated by 184 nucleotides GFF1104 and GFF1105 are separated by 158 nucleotides GFF1105 and GFF1106 overlap by 4 nucleotides
GFF1103 - Transcription termination factor Rho, at 416,189 to 417,454
GFF1103
GFF1104 - Thioredoxin, at 417,639 to 417,971
GFF1104
GFF1105 - Helicase, at 418,130 to 420,694
GFF1105
GFF1106 - UvrD/REP helicase, at 420,691 to 423,951
GFF1106
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -2
-1
0
1 at 417.474 kb on + strand at 417.552 kb on + strand at 417.552 kb on + strand at 417.552 kb on + strand at 417.553 kb on - strand at 417.553 kb on - strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.582 kb on - strand at 417.582 kb on - strand at 417.582 kb on - strand at 417.582 kb on - strand at 418.010 kb on - strand at 418.010 kb on - strand at 418.124 kb on + strand at 418.125 kb on - strand at 418.125 kb on - strand at 418.125 kb on - strand at 418.125 kb on - strand at 418.126 kb on + strand at 418.253 kb on + strand at 418.377 kb on - strand at 418.652 kb on + strand, within GFF1105 at 418.653 kb on - strand, within GFF1105 at 419.549 kb on + strand, within GFF1105 at 419.550 kb on - strand, within GFF1105 at 419.936 kb on + strand, within GFF1105 at 419.936 kb on + strand, within GFF1105 at 419.937 kb on - strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.706 kb on + strand at 420.707 kb on - strand at 420.746 kb on - strand at 421.052 kb on - strand, within GFF1106 at 421.171 kb on + strand, within GFF1106 at 421.172 kb on - strand, within GFF1106 at 421.264 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.268 kb on - strand, within GFF1106 at 421.390 kb on + strand, within GFF1106
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 417,474 + -0.0 417,552 + +1.2 417,552 + -1.0 417,552 + -0.3 417,553 - -0.2 417,553 - +0.2 417,556 + -2.1 417,556 + -1.0 417,556 + +1.4 417,556 + -1.0 417,556 + -0.2 417,556 + -0.3 417,556 + -0.4 417,582 - -1.3 417,582 - +0.6 417,582 - -0.3 417,582 - -0.7 418,010 - +0.6 418,010 - -0.6 418,124 + -0.5 418,125 - -1.0 418,125 - -0.3 418,125 - +1.2 418,125 - -1.5 418,126 + +1.5 418,253 + -0.5 418,377 - -1.8 418,652 + GFF1105 0.20 -0.8 418,653 - GFF1105 0.20 -1.2 419,549 + GFF1105 0.55 -2.4 419,550 - GFF1105 0.55 -0.2 419,936 + GFF1105 0.70 +0.4 419,936 + GFF1105 0.70 -1.3 419,937 - GFF1105 0.70 -2.0 420,371 + GFF1105 0.87 +0.8 420,371 + GFF1105 0.87 -0.5 420,706 + -1.6 420,707 - -1.5 420,746 - +0.2 421,052 - GFF1106 0.11 +0.2 421,171 + GFF1106 0.15 -1.0 421,172 - GFF1106 0.15 +0.5 421,264 + GFF1106 0.18 -0.5 421,267 + GFF1106 0.18 -1.2 421,267 + GFF1106 0.18 +1.2 421,268 - GFF1106 0.18 +1.2 421,390 + GFF1106 0.21 -2.3
Or see this region's nucleotide sequence