Strain Fitness in Variovorax sp. SCN45 around GFF1102

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1100 and GFF1101 are separated by 117 nucleotidesGFF1101 and GFF1102 are separated by 181 nucleotidesGFF1102 and GFF1103 are separated by 58 nucleotides GFF1100 - Probable inner membrane transmembrane protein, at 412,797 to 414,494 GFF1100 GFF1101 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent, at 414,612 to 414,881 GFF1101 GFF1102 - Uncharacterized oxidoreductase YdgJ, at 415,063 to 416,130 GFF1102 GFF1103 - Transcription termination factor Rho, at 416,189 to 417,454 GFF1103 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 414.613 kb on + strandat 414.613 kb on + strandat 414.613 kb on + strandat 414.613 kb on + strandat 414.613 kb on + strandat 414.613 kb on + strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 415.031 kb on - strandat 415.071 kb on + strandat 415.071 kb on + strandat 415.071 kb on + strandat 415.071 kb on + strandat 415.072 kb on - strandat 415.072 kb on - strandat 415.072 kb on - strandat 415.271 kb on + strand, within GFF1102at 415.272 kb on - strand, within GFF1102at 415.272 kb on - strand, within GFF1102at 415.272 kb on - strand, within GFF1102at 415.272 kb on - strand, within GFF1102at 415.504 kb on + strand, within GFF1102at 415.504 kb on + strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.505 kb on - strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.696 kb on + strand, within GFF1102at 415.697 kb on - strand, within GFF1102at 415.697 kb on - strand, within GFF1102at 415.697 kb on - strand, within GFF1102at 415.697 kb on - strand, within GFF1102at 415.697 kb on - strand, within GFF1102at 415.751 kb on + strand, within GFF1102at 415.751 kb on + strand, within GFF1102at 415.752 kb on - strand, within GFF1102at 415.752 kb on - strand, within GFF1102at 415.792 kb on + strand, within GFF1102at 415.792 kb on + strand, within GFF1102at 415.792 kb on + strand, within GFF1102at 415.792 kb on + strand, within GFF1102at 415.793 kb on - strand, within GFF1102at 415.793 kb on - strand, within GFF1102at 415.793 kb on - strand, within GFF1102at 415.793 kb on - strand, within GFF1102at 415.819 kb on + strand, within GFF1102at 415.819 kb on + strand, within GFF1102at 415.820 kb on - strand, within GFF1102at 415.938 kb on + strand, within GFF1102at 415.938 kb on + strand, within GFF1102at 415.938 kb on + strand, within GFF1102at 415.938 kb on + strand, within GFF1102at 415.938 kb on + strand, within GFF1102at 415.939 kb on - strand, within GFF1102at 415.978 kb on + strand, within GFF1102at 415.978 kb on + strand, within GFF1102at 415.978 kb on + strand, within GFF1102at 415.978 kb on + strand, within GFF1102at 415.978 kb on + strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.979 kb on - strand, within GFF1102at 415.987 kb on + strand, within GFF1102at 415.987 kb on + strand, within GFF1102at 415.987 kb on + strand, within GFF1102at 415.987 kb on + strand, within GFF1102at 415.987 kb on + strand, within GFF1102at 415.990 kb on + strand, within GFF1102at 415.990 kb on + strand, within GFF1102at 415.990 kb on + strand, within GFF1102at 415.990 kb on + strand, within GFF1102at 415.990 kb on + strand, within GFF1102at 415.991 kb on - strand, within GFF1102at 415.991 kb on - strand, within GFF1102at 416.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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414,613 + -0.2
414,613 + -1.3
414,613 + -0.4
414,613 + +0.5
414,613 + -0.3
414,613 + -0.6
414,614 - -0.6
414,614 - +0.2
414,614 - -0.4
415,031 - -0.2
415,071 + -0.7
415,071 + -0.6
415,071 + -1.3
415,071 + -1.9
415,072 - +0.6
415,072 - -0.1
415,072 - -0.2
415,271 + GFF1102 0.19 -0.0
415,272 - GFF1102 0.20 +0.8
415,272 - GFF1102 0.20 +0.6
415,272 - GFF1102 0.20 -0.5
415,272 - GFF1102 0.20 +0.2
415,504 + GFF1102 0.41 +0.1
415,504 + GFF1102 0.41 -1.4
415,505 - GFF1102 0.41 -0.5
415,505 - GFF1102 0.41 -0.3
415,505 - GFF1102 0.41 -0.3
415,505 - GFF1102 0.41 -0.6
415,505 - GFF1102 0.41 -0.6
415,505 - GFF1102 0.41 +0.2
415,696 + GFF1102 0.59 +0.4
415,696 + GFF1102 0.59 +0.7
415,696 + GFF1102 0.59 -0.4
415,696 + GFF1102 0.59 -0.3
415,696 + GFF1102 0.59 +0.4
415,696 + GFF1102 0.59 -0.2
415,697 - GFF1102 0.59 +0.4
415,697 - GFF1102 0.59 -0.2
415,697 - GFF1102 0.59 -0.6
415,697 - GFF1102 0.59 +0.2
415,697 - GFF1102 0.59 -0.5
415,751 + GFF1102 0.64 +1.3
415,751 + GFF1102 0.64 +3.6
415,752 - GFF1102 0.65 +0.9
415,752 - GFF1102 0.65 +0.8
415,792 + GFF1102 0.68 -0.4
415,792 + GFF1102 0.68 -0.1
415,792 + GFF1102 0.68 +0.2
415,792 + GFF1102 0.68 -0.4
415,793 - GFF1102 0.68 -1.0
415,793 - GFF1102 0.68 -0.5
415,793 - GFF1102 0.68 +0.1
415,793 - GFF1102 0.68 +0.1
415,819 + GFF1102 0.71 -0.1
415,819 + GFF1102 0.71 -0.9
415,820 - GFF1102 0.71 +2.8
415,938 + GFF1102 0.82 -0.8
415,938 + GFF1102 0.82 +0.7
415,938 + GFF1102 0.82 +0.2
415,938 + GFF1102 0.82 -0.6
415,938 + GFF1102 0.82 -0.6
415,939 - GFF1102 0.82 +0.8
415,978 + GFF1102 0.86 -0.5
415,978 + GFF1102 0.86 -1.0
415,978 + GFF1102 0.86 -0.8
415,978 + GFF1102 0.86 -0.2
415,978 + GFF1102 0.86 +0.2
415,979 - GFF1102 0.86 +0.1
415,979 - GFF1102 0.86 -0.6
415,979 - GFF1102 0.86 -0.7
415,979 - GFF1102 0.86 +0.8
415,979 - GFF1102 0.86 +0.5
415,979 - GFF1102 0.86 +0.5
415,979 - GFF1102 0.86 -0.4
415,979 - GFF1102 0.86 -1.6
415,987 + GFF1102 0.87 -1.9
415,987 + GFF1102 0.87 +0.6
415,987 + GFF1102 0.87 -0.2
415,987 + GFF1102 0.87 +0.2
415,987 + GFF1102 0.87 -0.9
415,990 + GFF1102 0.87 +1.1
415,990 + GFF1102 0.87 +0.2
415,990 + GFF1102 0.87 +0.5
415,990 + GFF1102 0.87 -0.0
415,990 + GFF1102 0.87 +0.2
415,991 - GFF1102 0.87 -0.2
415,991 - GFF1102 0.87 +0.9
416,117 + -1.3

Or see this region's nucleotide sequence