Strain Fitness in Variovorax sp. SCN45 around GFF1091

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1089 and GFF1090 are separated by 13 nucleotidesGFF1090 and GFF1091 are separated by 18 nucleotidesGFF1091 and GFF1092 are separated by 250 nucleotides GFF1089 - Polyphosphate kinase (EC 2.7.4.1), at 400,364 to 402,502 GFF1089 GFF1090 - Phosphohistidine phosphatase SixA, at 402,516 to 402,983 GFF1090 GFF1091 - Exopolyphosphatase (EC 3.6.1.11), at 403,002 to 404,522 GFF1091 GFF1092 - Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1), at 404,773 to 405,807 GFF1092 Position (kb) 403 404 405Strain fitness (log2 ratio) -2 -1 0 1 2at 402.176 kb on + strand, within GFF1089at 402.176 kb on + strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.214 kb on + strand, within GFF1089at 402.368 kb on + strandat 402.368 kb on + strandat 402.368 kb on + strandat 402.368 kb on + strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.597 kb on - strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 403.020 kb on + strandat 403.020 kb on + strandat 403.021 kb on - strandat 403.088 kb on - strandat 403.088 kb on - strandat 403.351 kb on + strand, within GFF1091at 403.351 kb on + strand, within GFF1091at 403.351 kb on + strand, within GFF1091at 403.352 kb on - strand, within GFF1091at 403.369 kb on + strand, within GFF1091at 403.369 kb on + strand, within GFF1091at 403.618 kb on + strand, within GFF1091at 403.619 kb on - strand, within GFF1091at 403.886 kb on - strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 404.032 kb on + strand, within GFF1091at 404.032 kb on + strand, within GFF1091at 404.033 kb on - strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.422 kb on + strandat 404.422 kb on + strandat 404.423 kb on - strandat 404.527 kb on + strandat 404.528 kb on - strandat 404.611 kb on + strandat 404.664 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.746 kb on + strandat 404.746 kb on + strandat 404.747 kb on - strandat 404.754 kb on - strandat 404.754 kb on - strandat 404.754 kb on - strandat 404.759 kb on + strandat 404.884 kb on + strand, within GFF1092at 404.884 kb on + strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.935 kb on + strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.424 kb on + strand, within GFF1092at 405.425 kb on - strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.455 kb on - strand, within GFF1092at 405.455 kb on - strand, within GFF1092

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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402,176 + GFF1089 0.85 +0.3
402,176 + GFF1089 0.85 +0.2
402,177 - GFF1089 0.85 -2.4
402,177 - GFF1089 0.85 +1.8
402,177 - GFF1089 0.85 +0.8
402,206 + GFF1089 0.86 -0.4
402,206 + GFF1089 0.86 -0.6
402,206 + GFF1089 0.86 +1.3
402,206 + GFF1089 0.86 +1.0
402,207 - GFF1089 0.86 -0.1
402,207 - GFF1089 0.86 -0.6
402,207 - GFF1089 0.86 -0.2
402,214 + GFF1089 0.86 +0.2
402,368 + -0.3
402,368 + -0.4
402,368 + -0.5
402,368 + +1.3
402,369 - -0.2
402,369 - +0.5
402,369 - -0.6
402,369 - -0.2
402,461 + -0.1
402,461 + +0.7
402,461 + +0.6
402,461 + +0.2
402,461 + -0.7
402,461 + -1.1
402,597 - GFF1090 0.17 -2.0
402,726 + GFF1090 0.45 +0.2
402,726 + GFF1090 0.45 +0.7
402,726 + GFF1090 0.45 -0.0
402,726 + GFF1090 0.45 -0.2
402,726 + GFF1090 0.45 -0.5
402,727 - GFF1090 0.45 -1.5
402,727 - GFF1090 0.45 +0.5
402,727 - GFF1090 0.45 -1.5
402,727 - GFF1090 0.45 +0.5
403,020 + +1.3
403,020 + +0.3
403,021 - +1.0
403,088 - -1.0
403,088 - +0.3
403,351 + GFF1091 0.23 -0.2
403,351 + GFF1091 0.23 -0.2
403,351 + GFF1091 0.23 +0.0
403,352 - GFF1091 0.23 -0.4
403,369 + GFF1091 0.24 +0.4
403,369 + GFF1091 0.24 -0.2
403,618 + GFF1091 0.40 +0.9
403,619 - GFF1091 0.41 +0.4
403,886 - GFF1091 0.58 +1.3
403,912 + GFF1091 0.60 -0.2
403,912 + GFF1091 0.60 -0.4
403,912 + GFF1091 0.60 -0.5
403,912 + GFF1091 0.60 +0.1
403,912 + GFF1091 0.60 +1.8
403,912 + GFF1091 0.60 -0.5
403,913 - GFF1091 0.60 -0.1
403,913 - GFF1091 0.60 +0.2
403,913 - GFF1091 0.60 -0.3
403,913 - GFF1091 0.60 +0.6
403,913 - GFF1091 0.60 +0.3
403,913 - GFF1091 0.60 -0.5
404,032 + GFF1091 0.68 -0.9
404,032 + GFF1091 0.68 -0.0
404,033 - GFF1091 0.68 -1.2
404,164 + GFF1091 0.76 +0.0
404,164 + GFF1091 0.76 -0.0
404,164 + GFF1091 0.76 +0.7
404,164 + GFF1091 0.76 +1.7
404,164 + GFF1091 0.76 +0.4
404,164 + GFF1091 0.76 +0.1
404,422 + -0.4
404,422 + +0.4
404,423 - +0.5
404,527 + -1.5
404,528 - -0.7
404,611 + -0.4
404,664 + +0.0
404,696 + +1.3
404,696 + -0.0
404,696 + +0.7
404,696 + +0.3
404,696 + +1.3
404,696 + -0.7
404,696 + -0.5
404,697 - +0.3
404,697 - -0.1
404,697 - +0.6
404,697 - +0.5
404,718 + -0.5
404,718 + +0.0
404,718 + -1.0
404,718 + +1.1
404,718 + +0.4
404,718 + -0.0
404,746 + +0.8
404,746 + +0.2
404,747 - +0.6
404,754 - +0.2
404,754 - +0.5
404,754 - -0.7
404,759 + +0.5
404,884 + GFF1092 0.11 +0.6
404,884 + GFF1092 0.11 +1.3
404,885 - GFF1092 0.11 +0.1
404,885 - GFF1092 0.11 +1.3
404,885 - GFF1092 0.11 +0.0
404,935 + GFF1092 0.16 -0.2
404,936 - GFF1092 0.16 -0.3
404,936 - GFF1092 0.16 -0.1
405,148 + GFF1092 0.36 -0.4
405,148 + GFF1092 0.36 +0.5
405,148 + GFF1092 0.36 +0.8
405,148 + GFF1092 0.36 -0.3
405,148 + GFF1092 0.36 -0.5
405,148 + GFF1092 0.36 +0.5
405,148 + GFF1092 0.36 -0.3
405,148 + GFF1092 0.36 +0.3
405,149 - GFF1092 0.36 -1.8
405,149 - GFF1092 0.36 -0.7
405,280 + GFF1092 0.49 +0.1
405,280 + GFF1092 0.49 +0.1
405,280 + GFF1092 0.49 -1.0
405,280 + GFF1092 0.49 +0.0
405,281 - GFF1092 0.49 -0.2
405,281 - GFF1092 0.49 +0.6
405,281 - GFF1092 0.49 -0.2
405,424 + GFF1092 0.63 +0.4
405,425 - GFF1092 0.63 +0.8
405,430 + GFF1092 0.63 +0.7
405,430 + GFF1092 0.63 -0.1
405,430 + GFF1092 0.63 -0.2
405,430 + GFF1092 0.63 -0.8
405,430 + GFF1092 0.63 -0.4
405,431 - GFF1092 0.64 +0.2
405,431 - GFF1092 0.64 -0.7
405,431 - GFF1092 0.64 -0.2
405,454 + GFF1092 0.66 +0.4
405,454 + GFF1092 0.66 +0.5
405,455 - GFF1092 0.66 -2.2
405,455 - GFF1092 0.66 -0.5

Or see this region's nucleotide sequence