Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1077 and GFF1078 are separated by 384 nucleotides GFF1078 and GFF1079 are separated by 95 nucleotides GFF1079 and GFF1080 are separated by 183 nucleotides
GFF1077 - no description, at 388,541 to 388,876
GFF1077
GFF1078 - hypothetical protein, at 389,261 to 389,995
GFF1078
GFF1079 - no description, at 390,091 to 390,342
GFF1079
GFF1080 - no description, at 390,526 to 390,789
GFF1080
Position (kb) 389
390 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 388.317 kb on + strand at 388.317 kb on + strand at 388.317 kb on + strand at 388.317 kb on + strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.318 kb on - strand at 388.321 kb on - strand at 388.333 kb on + strand at 388.334 kb on - strand at 388.334 kb on - strand at 388.429 kb on + strand at 388.430 kb on - strand at 388.431 kb on + strand at 388.431 kb on + strand at 388.431 kb on + strand at 388.432 kb on - strand at 388.461 kb on + strand at 388.461 kb on + strand at 388.461 kb on + strand at 388.462 kb on - strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.479 kb on - strand at 388.479 kb on - strand at 388.507 kb on + strand at 388.508 kb on + strand at 388.508 kb on - strand at 388.508 kb on - strand at 388.508 kb on - strand at 388.508 kb on - strand at 388.508 kb on - strand at 388.508 kb on - strand at 388.592 kb on + strand, within GFF1077 at 388.592 kb on + strand, within GFF1077 at 388.592 kb on + strand, within GFF1077 at 388.593 kb on - strand, within GFF1077 at 388.593 kb on - strand, within GFF1077 at 388.593 kb on - strand, within GFF1077 at 388.593 kb on - strand, within GFF1077 at 388.593 kb on - strand, within GFF1077 at 388.643 kb on + strand, within GFF1077 at 388.643 kb on + strand, within GFF1077 at 388.643 kb on + strand, within GFF1077 at 388.643 kb on + strand, within GFF1077 at 388.643 kb on + strand, within GFF1077 at 388.644 kb on - strand, within GFF1077 at 388.644 kb on - strand, within GFF1077 at 388.644 kb on - strand, within GFF1077 at 388.644 kb on - strand, within GFF1077 at 388.644 kb on - strand, within GFF1077 at 388.874 kb on + strand at 388.874 kb on + strand at 388.874 kb on + strand at 388.875 kb on - strand at 388.875 kb on - strand at 388.875 kb on - strand at 388.987 kb on + strand at 388.987 kb on + strand at 389.065 kb on + strand at 389.105 kb on + strand at 389.105 kb on + strand at 389.105 kb on + strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.108 kb on - strand at 389.108 kb on - strand at 389.108 kb on - strand at 389.228 kb on + strand at 389.229 kb on - strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.262 kb on + strand at 389.262 kb on + strand at 389.262 kb on + strand at 389.263 kb on - strand at 389.263 kb on - strand at 389.263 kb on - strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.279 kb on + strand at 389.280 kb on - strand at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.425 kb on - strand, within GFF1078 at 389.425 kb on - strand, within GFF1078 at 389.428 kb on + strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.435 kb on + strand, within GFF1078 at 389.436 kb on - strand, within GFF1078 at 389.465 kb on + strand, within GFF1078 at 389.473 kb on - strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.557 kb on - strand, within GFF1078 at 389.557 kb on - strand, within GFF1078 at 389.649 kb on + strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.679 kb on - strand, within GFF1078 at 389.679 kb on - strand, within GFF1078 at 389.685 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.718 kb on - strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.823 kb on + strand, within GFF1078 at 389.823 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.884 kb on - strand, within GFF1078 at 389.894 kb on + strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.921 kb on + strand, within GFF1078 at 389.922 kb on - strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 390.022 kb on + strand at 390.036 kb on - strand at 390.116 kb on + strand at 390.117 kb on - strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.213 kb on - strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.246 kb on - strand, within GFF1079 at 390.246 kb on - strand, within GFF1079 at 390.331 kb on - strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.572 kb on + strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.606 kb on + strand, within GFF1080 at 390.606 kb on + strand, within GFF1080 at 390.607 kb on - strand, within GFF1080 at 390.615 kb on + strand, within GFF1080 at 390.615 kb on + strand, within GFF1080 at 390.806 kb on + strand at 390.806 kb on + strand at 390.820 kb on - strand at 390.820 kb on - strand at 390.834 kb on - strand at 390.918 kb on + strand at 390.918 kb on + strand at 390.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 388,317 + +1.0 388,317 + +0.0 388,317 + +0.0 388,317 + -0.1 388,318 - +0.8 388,318 - -0.4 388,318 - -0.5 388,318 - +0.4 388,318 - +0.2 388,318 - -0.5 388,318 - +0.1 388,318 - -0.0 388,318 - -1.1 388,321 - -0.7 388,333 + +0.6 388,334 - +0.5 388,334 - +0.4 388,429 + -1.3 388,430 - +0.9 388,431 + -1.5 388,431 + +0.0 388,431 + -0.7 388,432 - +0.5 388,461 + -0.1 388,461 + -1.1 388,461 + -0.5 388,462 - +0.8 388,478 + -1.7 388,478 + -0.7 388,479 - -0.2 388,479 - +0.2 388,507 + +1.8 388,508 + -0.3 388,508 - -0.6 388,508 - +0.4 388,508 - +0.2 388,508 - +0.2 388,508 - -1.2 388,508 - -0.1 388,592 + GFF1077 0.15 -0.1 388,592 + GFF1077 0.15 -0.2 388,592 + GFF1077 0.15 +0.3 388,593 - GFF1077 0.15 -0.5 388,593 - GFF1077 0.15 +0.4 388,593 - GFF1077 0.15 -0.6 388,593 - GFF1077 0.15 -1.0 388,593 - GFF1077 0.15 +0.6 388,643 + GFF1077 0.30 +0.1 388,643 + GFF1077 0.30 +0.3 388,643 + GFF1077 0.30 +0.5 388,643 + GFF1077 0.30 -0.1 388,643 + GFF1077 0.30 -0.3 388,644 - GFF1077 0.31 +0.1 388,644 - GFF1077 0.31 +0.0 388,644 - GFF1077 0.31 +2.4 388,644 - GFF1077 0.31 +0.8 388,644 - GFF1077 0.31 -0.0 388,874 + +0.1 388,874 + -0.3 388,874 + -0.4 388,875 - -1.1 388,875 - +1.8 388,875 - -0.0 388,987 + +1.4 388,987 + -0.1 389,065 + +0.6 389,105 + +0.1 389,105 + +1.4 389,105 + -0.0 389,106 - -1.4 389,106 - -1.3 389,106 - -0.2 389,106 - -2.0 389,106 - -0.0 389,106 - +0.5 389,108 - -1.1 389,108 - +0.7 389,108 - -0.4 389,228 + -0.3 389,229 - +0.4 389,259 + -0.3 389,259 + +0.0 389,259 + -0.4 389,259 + +0.1 389,259 + +3.9 389,260 - +0.3 389,260 - +1.3 389,260 - +0.2 389,260 - -0.2 389,262 + +0.5 389,262 + +0.6 389,262 + -0.6 389,263 - +0.4 389,263 - -1.1 389,263 - +0.3 389,266 + +0.0 389,266 + -0.6 389,266 + +0.8 389,266 + +0.2 389,266 + -0.2 389,266 + +0.0 389,267 - +0.2 389,267 - +1.3 389,267 - +1.5 389,267 - +1.0 389,267 - +0.2 389,279 + -0.9 389,280 - -0.2 389,371 + GFF1078 0.15 +0.3 389,371 + GFF1078 0.15 -0.2 389,371 + GFF1078 0.15 -2.3 389,371 + GFF1078 0.15 -1.1 389,372 - GFF1078 0.15 +0.0 389,372 - GFF1078 0.15 +1.1 389,372 - GFF1078 0.15 -0.4 389,372 - GFF1078 0.15 +1.8 389,425 - GFF1078 0.22 -1.2 389,425 - GFF1078 0.22 -0.5 389,428 + GFF1078 0.23 -0.4 389,429 - GFF1078 0.23 -0.6 389,429 - GFF1078 0.23 -0.1 389,429 - GFF1078 0.23 -0.5 389,435 + GFF1078 0.24 +0.2 389,436 - GFF1078 0.24 -0.8 389,465 + GFF1078 0.28 +0.2 389,473 - GFF1078 0.29 +0.3 389,556 + GFF1078 0.40 -0.7 389,556 + GFF1078 0.40 -0.2 389,556 + GFF1078 0.40 +0.6 389,557 - GFF1078 0.40 -0.3 389,557 - GFF1078 0.40 +0.3 389,649 + GFF1078 0.53 -0.1 389,650 - GFF1078 0.53 +1.4 389,650 - GFF1078 0.53 -0.0 389,650 - GFF1078 0.53 +0.1 389,678 + GFF1078 0.57 +0.5 389,678 + GFF1078 0.57 +0.0 389,678 + GFF1078 0.57 -0.6 389,678 + GFF1078 0.57 +0.2 389,678 + GFF1078 0.57 +0.1 389,679 - GFF1078 0.57 +0.3 389,679 - GFF1078 0.57 +0.1 389,685 + GFF1078 0.58 +0.5 389,717 + GFF1078 0.62 -0.1 389,717 + GFF1078 0.62 -0.5 389,717 + GFF1078 0.62 -0.7 389,718 - GFF1078 0.62 -0.9 389,724 + GFF1078 0.63 +0.3 389,724 + GFF1078 0.63 -0.7 389,724 + GFF1078 0.63 +0.4 389,724 + GFF1078 0.63 -0.3 389,724 + GFF1078 0.63 +2.0 389,725 - GFF1078 0.63 -1.9 389,725 - GFF1078 0.63 -1.1 389,725 - GFF1078 0.63 +0.4 389,823 + GFF1078 0.76 -0.7 389,823 + GFF1078 0.76 +1.3 389,883 + GFF1078 0.85 +0.8 389,883 + GFF1078 0.85 +0.5 389,883 + GFF1078 0.85 +0.0 389,883 + GFF1078 0.85 -1.4 389,883 + GFF1078 0.85 +0.4 389,884 - GFF1078 0.85 -0.3 389,894 + GFF1078 0.86 +0.2 389,895 - GFF1078 0.86 -0.7 389,895 - GFF1078 0.86 +0.3 389,895 - GFF1078 0.86 -0.2 389,921 + GFF1078 0.90 -0.1 389,922 - +0.7 389,947 + -1.0 389,947 + +0.2 389,947 + +0.2 389,947 + -0.0 389,947 + -0.3 389,948 - +0.4 389,948 - +0.7 389,948 - +0.5 389,948 - -0.1 389,948 - +0.1 389,948 - +0.3 389,948 - -0.2 390,022 + +0.6 390,036 - -0.7 390,116 + +0.7 390,117 - GFF1079 0.10 +0.6 390,212 + GFF1079 0.48 +0.1 390,212 + GFF1079 0.48 +0.2 390,212 + GFF1079 0.48 -0.2 390,213 - GFF1079 0.48 -0.8 390,245 + GFF1079 0.61 -0.5 390,245 + GFF1079 0.61 -0.2 390,245 + GFF1079 0.61 -0.4 390,245 + GFF1079 0.61 -1.0 390,246 - GFF1079 0.62 +0.0 390,246 - GFF1079 0.62 +0.5 390,331 - +0.1 390,531 + +0.1 390,531 + +0.2 390,531 + +0.2 390,531 + +0.5 390,572 + GFF1080 0.17 -1.2 390,573 - GFF1080 0.18 +0.8 390,573 - GFF1080 0.18 +0.5 390,573 - GFF1080 0.18 +0.0 390,573 - GFF1080 0.18 -0.2 390,606 + GFF1080 0.30 +1.1 390,606 + GFF1080 0.30 -1.1 390,607 - GFF1080 0.31 +0.3 390,615 + GFF1080 0.34 -0.2 390,615 + GFF1080 0.34 +0.6 390,806 + -0.4 390,806 + -1.3 390,820 - -1.9 390,820 - -0.7 390,834 - +0.8 390,918 + -1.1 390,918 + -0.3 390,919 - +0.3
Or see this region's nucleotide sequence