Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1060 and GFF1061 overlap by 22 nucleotides GFF1061 and GFF1062 overlap by 1 nucleotides GFF1062 and GFF1063 are separated by 41 nucleotides GFF1063 and GFF1064 are separated by 75 nucleotides
GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949
GFF1060
GFF1061 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,928 to 375,686
GFF1061
GFF1062 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 375,686 to 376,462
GFF1062
GFF1063 - dioxygenase, TauD/TfdA family, at 376,504 to 377,343
GFF1063
GFF1064 - Transcriptional regulator, GntR family, at 377,419 to 378,153
GFF1064
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1 at 375.141 kb on + strand, within GFF1061 at 375.248 kb on + strand, within GFF1061 at 375.249 kb on - strand, within GFF1061 at 375.259 kb on - strand, within GFF1061 at 375.561 kb on + strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.761 kb on + strand at 375.800 kb on + strand, within GFF1062 at 375.800 kb on + strand, within GFF1062 at 375.801 kb on - strand, within GFF1062 at 375.801 kb on - strand, within GFF1062 at 375.971 kb on - strand, within GFF1062 at 376.118 kb on + strand, within GFF1062 at 376.253 kb on + strand, within GFF1062 at 376.253 kb on + strand, within GFF1062 at 376.253 kb on + strand, within GFF1062 at 376.253 kb on + strand, within GFF1062 at 376.254 kb on - strand, within GFF1062 at 376.256 kb on + strand, within GFF1062 at 376.256 kb on + strand, within GFF1062 at 376.257 kb on - strand, within GFF1062 at 376.257 kb on - strand, within GFF1062 at 376.326 kb on - strand, within GFF1062 at 376.729 kb on + strand, within GFF1063 at 376.741 kb on + strand, within GFF1063 at 376.741 kb on + strand, within GFF1063 at 376.822 kb on + strand, within GFF1063 at 376.823 kb on - strand, within GFF1063 at 376.823 kb on - strand, within GFF1063 at 376.823 kb on - strand, within GFF1063 at 376.976 kb on - strand, within GFF1063 at 376.976 kb on - strand, within GFF1063 at 376.976 kb on - strand, within GFF1063 at 376.984 kb on + strand, within GFF1063 at 376.985 kb on - strand, within GFF1063 at 376.988 kb on - strand, within GFF1063 at 377.101 kb on + strand, within GFF1063 at 377.101 kb on + strand, within GFF1063 at 377.102 kb on - strand, within GFF1063 at 377.102 kb on - strand, within GFF1063 at 377.206 kb on + strand, within GFF1063
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 375,141 + GFF1061 0.28 -0.3 375,248 + GFF1061 0.42 -1.2 375,249 - GFF1061 0.42 +0.1 375,259 - GFF1061 0.44 -0.5 375,561 + GFF1061 0.83 -0.3 375,562 - GFF1061 0.84 +0.4 375,562 - GFF1061 0.84 -1.5 375,562 - GFF1061 0.84 -1.5 375,562 - GFF1061 0.84 +0.0 375,562 - GFF1061 0.84 -0.1 375,761 + +1.4 375,800 + GFF1062 0.15 +0.7 375,800 + GFF1062 0.15 -0.2 375,801 - GFF1062 0.15 +1.0 375,801 - GFF1062 0.15 +0.5 375,971 - GFF1062 0.37 +0.3 376,118 + GFF1062 0.56 +0.8 376,253 + GFF1062 0.73 +0.5 376,253 + GFF1062 0.73 -0.5 376,253 + GFF1062 0.73 +0.6 376,253 + GFF1062 0.73 +0.5 376,254 - GFF1062 0.73 -1.2 376,256 + GFF1062 0.73 -1.5 376,256 + GFF1062 0.73 -0.4 376,257 - GFF1062 0.73 +1.4 376,257 - GFF1062 0.73 +0.1 376,326 - GFF1062 0.82 +0.3 376,729 + GFF1063 0.27 -0.6 376,741 + GFF1063 0.28 -0.5 376,741 + GFF1063 0.28 -0.2 376,822 + GFF1063 0.38 +0.1 376,823 - GFF1063 0.38 -0.1 376,823 - GFF1063 0.38 -1.6 376,823 - GFF1063 0.38 -1.0 376,976 - GFF1063 0.56 +0.7 376,976 - GFF1063 0.56 -0.2 376,976 - GFF1063 0.56 +0.0 376,984 + GFF1063 0.57 -0.9 376,985 - GFF1063 0.57 -0.9 376,988 - GFF1063 0.58 +0.1 377,101 + GFF1063 0.71 -0.2 377,101 + GFF1063 0.71 -0.3 377,102 - GFF1063 0.71 -0.5 377,102 - GFF1063 0.71 -0.2 377,206 + GFF1063 0.84 -1.0
Or see this region's nucleotide sequence