Strain Fitness in Variovorax sp. SCN45 around GFF1057

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1055 and GFF1056 are separated by 21 nucleotidesGFF1056 and GFF1057 are separated by 79 nucleotidesGFF1057 and GFF1058 are separated by 139 nucleotides GFF1055 - Fumarylacetoacetate hydrolase family protein, at 369,466 to 370,326 GFF1055 GFF1056 - hypothetical protein, at 370,348 to 370,662 GFF1056 GFF1057 - hypothetical protein, at 370,742 to 372,184 GFF1057 GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331 GFF1058 Position (kb) 370 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 369.754 kb on + strand, within GFF1055at 369.754 kb on + strand, within GFF1055at 369.841 kb on + strand, within GFF1055at 369.842 kb on - strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.956 kb on - strand, within GFF1055at 370.327 kb on + strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.573 kb on + strand, within GFF1056at 370.573 kb on + strand, within GFF1056at 370.573 kb on + strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.668 kb on + strandat 370.668 kb on + strandat 370.668 kb on + strandat 370.669 kb on - strandat 370.669 kb on - strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.950 kb on + strand, within GFF1057at 370.950 kb on + strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 371.124 kb on + strand, within GFF1057at 371.124 kb on + strand, within GFF1057at 371.125 kb on - strand, within GFF1057at 371.125 kb on - strand, within GFF1057at 371.244 kb on + strand, within GFF1057at 371.245 kb on - strand, within GFF1057at 371.304 kb on - strand, within GFF1057at 371.304 kb on - strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.418 kb on + strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 371.419 kb on - strand, within GFF1057at 372.099 kb on + strandat 372.100 kb on - strandat 372.100 kb on - strandat 372.100 kb on - strandat 372.306 kb on + strandat 372.306 kb on + strandat 372.307 kb on - strandat 372.344 kb on + strandat 372.344 kb on + strandat 372.344 kb on + strandat 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.679 kb on - strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.754 kb on - strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.763 kb on - strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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369,754 + GFF1055 0.33 +0.5
369,754 + GFF1055 0.33 -0.6
369,841 + GFF1055 0.44 -0.1
369,842 - GFF1055 0.44 +0.4
369,883 + GFF1055 0.48 -0.0
369,883 + GFF1055 0.48 +0.4
369,883 + GFF1055 0.48 -1.7
369,883 + GFF1055 0.48 +1.3
369,884 - GFF1055 0.49 -1.2
369,884 - GFF1055 0.49 +0.2
369,884 - GFF1055 0.49 +0.8
369,884 - GFF1055 0.49 +0.7
369,884 - GFF1055 0.49 -0.5
369,884 - GFF1055 0.49 -0.2
369,884 - GFF1055 0.49 +0.7
369,955 + GFF1055 0.57 +2.0
369,955 + GFF1055 0.57 -0.1
369,955 + GFF1055 0.57 +0.1
369,956 - GFF1055 0.57 -0.9
370,327 + -0.0
370,328 - -0.1
370,328 - -0.2
370,328 - -0.3
370,328 - +0.4
370,328 - +0.4
370,573 + GFF1056 0.71 +0.1
370,573 + GFF1056 0.71 -0.7
370,573 + GFF1056 0.71 +1.4
370,574 - GFF1056 0.72 -0.4
370,574 - GFF1056 0.72 -1.9
370,574 - GFF1056 0.72 +0.8
370,574 - GFF1056 0.72 +0.4
370,574 - GFF1056 0.72 -1.3
370,574 - GFF1056 0.72 +0.1
370,574 - GFF1056 0.72 -0.1
370,592 + GFF1056 0.77 -0.7
370,592 + GFF1056 0.77 -1.5
370,592 + GFF1056 0.77 +0.7
370,592 + GFF1056 0.77 +0.3
370,592 + GFF1056 0.77 +0.3
370,592 + GFF1056 0.77 -1.3
370,593 - GFF1056 0.78 +0.0
370,593 - GFF1056 0.78 -0.7
370,593 - GFF1056 0.78 -0.6
370,593 - GFF1056 0.78 +0.6
370,668 + -0.5
370,668 + -0.8
370,668 + -0.8
370,669 - +0.4
370,669 - -1.6
370,720 + +1.0
370,720 + -0.2
370,720 + -0.3
370,720 + +1.5
370,720 + +1.1
370,720 + +1.0
370,720 + -0.7
370,720 + -0.5
370,720 + -0.6
370,720 + +0.4
370,720 + +0.6
370,720 + -0.2
370,720 + +0.3
370,720 + +0.5
370,720 + +0.2
370,721 - -0.0
370,721 - +0.4
370,721 - -0.5
370,721 - -0.7
370,721 - +0.8
370,721 - +1.4
370,721 - +1.3
370,721 - -0.7
370,721 - +0.3
370,721 - +0.4
370,721 - +0.0
370,721 - +0.7
370,721 - +0.5
370,721 - -1.1
370,721 - -0.4
370,721 - -0.7
370,721 - +1.8
370,721 - -0.6
370,950 + GFF1057 0.14 -0.2
370,950 + GFF1057 0.14 -0.1
370,951 - GFF1057 0.14 -0.0
370,951 - GFF1057 0.14 -0.3
370,951 - GFF1057 0.14 -0.7
371,124 + GFF1057 0.26 +0.5
371,124 + GFF1057 0.26 +0.5
371,125 - GFF1057 0.27 -1.3
371,125 - GFF1057 0.27 +0.3
371,244 + GFF1057 0.35 +2.8
371,245 - GFF1057 0.35 +0.8
371,304 - GFF1057 0.39 -0.3
371,304 - GFF1057 0.39 +0.7
371,418 + GFF1057 0.47 -0.6
371,418 + GFF1057 0.47 -0.6
371,418 + GFF1057 0.47 -0.9
371,418 + GFF1057 0.47 +0.6
371,418 + GFF1057 0.47 -0.5
371,418 + GFF1057 0.47 -1.2
371,418 + GFF1057 0.47 +0.8
371,418 + GFF1057 0.47 -0.4
371,418 + GFF1057 0.47 -1.3
371,418 + GFF1057 0.47 +0.5
371,418 + GFF1057 0.47 +1.1
371,418 + GFF1057 0.47 +0.2
371,418 + GFF1057 0.47 -0.1
371,419 - GFF1057 0.47 -0.2
371,419 - GFF1057 0.47 +0.6
371,419 - GFF1057 0.47 +0.8
371,419 - GFF1057 0.47 +0.2
371,419 - GFF1057 0.47 +0.8
371,419 - GFF1057 0.47 +0.0
371,419 - GFF1057 0.47 +0.1
371,419 - GFF1057 0.47 +1.3
371,419 - GFF1057 0.47 -1.2
371,419 - GFF1057 0.47 +0.3
371,419 - GFF1057 0.47 -0.5
371,419 - GFF1057 0.47 -0.7
372,099 + -0.3
372,100 - -0.6
372,100 - -0.3
372,100 - -0.5
372,306 + +0.3
372,306 + +0.5
372,307 - +1.1
372,344 + +1.4
372,344 + +0.3
372,344 + +0.6
372,459 + GFF1058 0.13 +1.2
372,459 + GFF1058 0.13 -0.2
372,459 + GFF1058 0.13 +0.1
372,459 + GFF1058 0.13 -0.4
372,459 + GFF1058 0.13 +0.6
372,459 + GFF1058 0.13 +1.8
372,459 + GFF1058 0.13 -1.2
372,460 - GFF1058 0.13 -0.1
372,460 - GFF1058 0.13 +0.8
372,460 - GFF1058 0.13 +1.8
372,460 - GFF1058 0.13 +0.4
372,460 - GFF1058 0.13 +0.2
372,460 - GFF1058 0.13 +0.4
372,460 - GFF1058 0.13 -0.9
372,460 - GFF1058 0.13 +0.2
372,460 - GFF1058 0.13 +0.0
372,483 + GFF1058 0.16 +0.5
372,483 + GFF1058 0.16 -0.7
372,483 + GFF1058 0.16 -0.4
372,483 + GFF1058 0.16 +0.5
372,483 + GFF1058 0.16 +0.8
372,483 + GFF1058 0.16 +1.8
372,483 + GFF1058 0.16 -0.0
372,484 - GFF1058 0.16 -0.6
372,484 - GFF1058 0.16 -1.6
372,484 - GFF1058 0.16 -0.1
372,484 - GFF1058 0.16 -0.4
372,484 - GFF1058 0.16 -0.3
372,484 - GFF1058 0.16 -0.7
372,484 - GFF1058 0.16 -0.5
372,484 - GFF1058 0.16 -0.3
372,669 + GFF1058 0.34 +0.5
372,669 + GFF1058 0.34 +0.0
372,669 + GFF1058 0.34 +1.8
372,669 + GFF1058 0.34 -0.5
372,669 + GFF1058 0.34 +0.3
372,669 + GFF1058 0.34 -0.2
372,670 - GFF1058 0.34 +0.1
372,670 - GFF1058 0.34 -1.7
372,670 - GFF1058 0.34 -0.7
372,670 - GFF1058 0.34 +0.1
372,670 - GFF1058 0.34 +4.1
372,670 - GFF1058 0.34 +1.0
372,670 - GFF1058 0.34 +0.2
372,670 - GFF1058 0.34 -0.6
372,670 - GFF1058 0.34 +0.6
372,678 + GFF1058 0.35 +1.4
372,678 + GFF1058 0.35 -1.3
372,678 + GFF1058 0.35 +1.4
372,678 + GFF1058 0.35 -1.7
372,678 + GFF1058 0.35 -0.2
372,678 + GFF1058 0.35 +0.3
372,678 + GFF1058 0.35 +0.3
372,678 + GFF1058 0.35 -1.3
372,679 - GFF1058 0.35 -0.0
372,753 + GFF1058 0.43 +1.5
372,753 + GFF1058 0.43 +1.2
372,753 + GFF1058 0.43 +0.2
372,754 - GFF1058 0.43 +0.0
372,762 + GFF1058 0.43 -0.2
372,762 + GFF1058 0.43 -0.2
372,762 + GFF1058 0.43 -0.6
372,763 - GFF1058 0.44 +0.1
372,873 + GFF1058 0.54 +0.3
372,873 + GFF1058 0.54 +0.4
372,873 + GFF1058 0.54 -1.5
372,873 + GFF1058 0.54 +0.4
372,874 - GFF1058 0.55 +0.1
372,874 - GFF1058 0.55 -1.2
372,874 - GFF1058 0.55 -1.0
372,876 + GFF1058 0.55 -0.9
372,876 + GFF1058 0.55 +0.1
372,876 + GFF1058 0.55 +0.1
372,876 + GFF1058 0.55 -0.5
372,876 + GFF1058 0.55 -0.3
372,876 + GFF1058 0.55 -0.3
372,876 + GFF1058 0.55 +0.5
372,876 + GFF1058 0.55 -0.5
372,877 - GFF1058 0.55 -1.2
372,877 - GFF1058 0.55 +0.1
372,877 - GFF1058 0.55 +1.0
372,877 - GFF1058 0.55 +0.3
372,877 - GFF1058 0.55 -0.1
373,053 + GFF1058 0.72 +0.7
373,053 + GFF1058 0.72 -0.7
373,054 - GFF1058 0.72 +0.3
373,054 - GFF1058 0.72 +0.5
373,054 - GFF1058 0.72 +0.7

Or see this region's nucleotide sequence