Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16940

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09115 and A4249_RS16940 are separated by 220 nucleotidesA4249_RS16940 and A4249_RS09120 are separated by 128 nucleotidesA4249_RS09120 and A4249_RS09125 are separated by 12 nucleotidesA4249_RS09125 and A4249_RS09130 are separated by 195 nucleotides A4249_RS09115: A4249_RS09115 - sigma-54 dependent transcriptional regulator, at 1,825,224 to 1,826,675 _RS09115 A4249_RS16940: A4249_RS16940 - GIY-YIG nuclease family protein, at 1,826,896 to 1,826,994 _RS16940 A4249_RS09120: A4249_RS09120 - hypothetical protein, at 1,827,123 to 1,827,503 _RS09120 A4249_RS09125: A4249_RS09125 - DUF2312 domain-containing protein, at 1,827,516 to 1,827,791 _RS09125 A4249_RS09130: A4249_RS09130 - type B 50S ribosomal protein L36, at 1,827,987 to 1,828,112 _RS09130 Position (kb) 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2at 1826.130 kb on + strand, within A4249_RS09115at 1826.130 kb on + strand, within A4249_RS09115at 1826.131 kb on - strand, within A4249_RS09115at 1826.131 kb on - strand, within A4249_RS09115at 1826.565 kb on + strandat 1826.565 kb on + strandat 1826.565 kb on + strandat 1826.565 kb on + strandat 1826.566 kb on - strandat 1826.566 kb on - strandat 1826.566 kb on - strandat 1826.622 kb on + strandat 1826.680 kb on + strandat 1826.773 kb on + strandat 1826.773 kb on + strandat 1826.773 kb on + strandat 1826.773 kb on + strandat 1826.773 kb on + strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.774 kb on - strandat 1826.784 kb on - strandat 1826.784 kb on - strandat 1826.900 kb on + strandat 1826.900 kb on + strandat 1826.900 kb on + strandat 1826.901 kb on - strandat 1826.924 kb on + strand, within A4249_RS16940at 1826.925 kb on - strand, within A4249_RS16940at 1826.979 kb on - strand, within A4249_RS16940at 1826.979 kb on - strand, within A4249_RS16940at 1826.979 kb on - strand, within A4249_RS16940at 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.002 kb on + strandat 1827.003 kb on - strandat 1827.003 kb on - strandat 1827.003 kb on - strandat 1827.003 kb on - strandat 1827.003 kb on - strandat 1827.003 kb on - strandat 1827.034 kb on - strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.035 kb on + strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.036 kb on - strandat 1827.066 kb on + strandat 1827.066 kb on + strandat 1827.066 kb on + strandat 1827.067 kb on - strandat 1827.165 kb on + strand, within A4249_RS09120at 1827.165 kb on + strand, within A4249_RS09120at 1827.166 kb on - strand, within A4249_RS09120at 1827.166 kb on - strand, within A4249_RS09120at 1827.166 kb on - strand, within A4249_RS09120at 1827.166 kb on - strand, within A4249_RS09120at 1827.517 kb on + strandat 1827.517 kb on + strandat 1827.517 kb on + strandat 1827.517 kb on + strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.518 kb on - strandat 1827.824 kb on - strandat 1827.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,826,130 + A4249_RS09115 0.62 +0.6
1,826,130 + A4249_RS09115 0.62 +2.0
1,826,131 - A4249_RS09115 0.62 -0.1
1,826,131 - A4249_RS09115 0.62 -0.3
1,826,565 + +0.0
1,826,565 + +0.6
1,826,565 + -0.9
1,826,565 + -1.0
1,826,566 - -0.6
1,826,566 - +0.1
1,826,566 - +0.6
1,826,622 + +1.2
1,826,680 + -0.6
1,826,773 + -1.4
1,826,773 + -0.1
1,826,773 + +0.0
1,826,773 + -0.4
1,826,773 + -1.9
1,826,774 - +0.1
1,826,774 - +0.2
1,826,774 - +0.3
1,826,774 - +0.3
1,826,774 - -0.8
1,826,774 - +0.3
1,826,774 - -0.1
1,826,774 - +0.3
1,826,774 - -0.6
1,826,774 - -0.2
1,826,784 - -0.4
1,826,784 - -0.2
1,826,900 + -0.2
1,826,900 + +0.1
1,826,900 + +0.5
1,826,901 - +0.2
1,826,924 + A4249_RS16940 0.28 -0.9
1,826,925 - A4249_RS16940 0.29 -0.2
1,826,979 - A4249_RS16940 0.84 +0.8
1,826,979 - A4249_RS16940 0.84 -0.3
1,826,979 - A4249_RS16940 0.84 -0.5
1,827,002 + +0.8
1,827,002 + +0.1
1,827,002 + -0.4
1,827,002 + +0.8
1,827,002 + +0.2
1,827,002 + +0.4
1,827,002 + -0.3
1,827,002 + -0.3
1,827,002 + -0.7
1,827,003 - -0.4
1,827,003 - +0.2
1,827,003 - -0.4
1,827,003 - -0.0
1,827,003 - -0.8
1,827,003 - -1.3
1,827,034 - +0.2
1,827,035 + -0.1
1,827,035 + -0.4
1,827,035 + +0.6
1,827,035 + -0.4
1,827,035 + +0.4
1,827,035 + +0.2
1,827,035 + +0.5
1,827,035 + -1.5
1,827,035 + +0.7
1,827,035 + +0.6
1,827,035 + -0.1
1,827,035 + -1.1
1,827,035 + -0.3
1,827,035 + -0.4
1,827,035 + -1.1
1,827,035 + +0.6
1,827,035 + -0.4
1,827,036 - -0.1
1,827,036 - +0.5
1,827,036 - +0.0
1,827,036 - +0.6
1,827,036 - -0.2
1,827,036 - -0.8
1,827,036 - -1.0
1,827,036 - -0.2
1,827,036 - +0.3
1,827,036 - +0.2
1,827,036 - +0.1
1,827,036 - -1.1
1,827,036 - -0.2
1,827,036 - +0.6
1,827,066 + -0.5
1,827,066 + -0.5
1,827,066 + -0.4
1,827,067 - +1.2
1,827,165 + A4249_RS09120 0.11 +0.3
1,827,165 + A4249_RS09120 0.11 +0.2
1,827,166 - A4249_RS09120 0.11 +0.5
1,827,166 - A4249_RS09120 0.11 +1.0
1,827,166 - A4249_RS09120 0.11 +0.4
1,827,166 - A4249_RS09120 0.11 +0.3
1,827,517 + +1.4
1,827,517 + -1.5
1,827,517 + -0.5
1,827,517 + -0.2
1,827,518 - -0.5
1,827,518 - -0.5
1,827,518 - -1.1
1,827,518 - +0.2
1,827,518 - +0.2
1,827,518 - -0.5
1,827,518 - -0.4
1,827,518 - +0.2
1,827,518 - -0.8
1,827,518 - -0.9
1,827,824 - -1.0
1,827,989 - -1.9

Or see this region's nucleotide sequence