Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14615

Experiment: Xanthine 0.6574 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS14610 and A4249_RS14615 overlap by 1 nucleotidesA4249_RS14615 and A4249_RS14620 are separated by 83 nucleotidesA4249_RS14620 and A4249_RS14625 are separated by 199 nucleotides A4249_RS14610: A4249_RS14610 - glycosyltransferase family 39 protein, at 2,959,644 to 2,961,332 _RS14610 A4249_RS14615: A4249_RS14615 - hydroxymethylglutaryl-CoA lyase, at 2,961,332 to 2,962,246 _RS14615 A4249_RS14620: A4249_RS14620 - hypothetical protein, at 2,962,330 to 2,962,755 _RS14620 A4249_RS14625: A4249_RS14625 - hypothetical protein, at 2,962,955 to 2,963,308 _RS14625 Position (kb) 2961 2962 2963Strain fitness (log2 ratio) -1 0 1at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.769 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2961.241 kb on - strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.279 kb on + strandat 2961.279 kb on + strandat 2961.279 kb on + strandat 2961.280 kb on - strandat 2961.331 kb on - strandat 2962.277 kb on + strandat 2962.277 kb on + strandat 2962.278 kb on - strandat 2962.297 kb on + strandat 2962.298 kb on - strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.372 kb on + strandat 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.373 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.378 kb on - strand, within A4249_RS14620at 2962.608 kb on - strand, within A4249_RS14620at 2962.788 kb on + strandat 2962.789 kb on - strandat 2962.810 kb on + strandat 2962.811 kb on - strandat 2963.013 kb on + strand, within A4249_RS14625at 2963.013 kb on + strand, within A4249_RS14625at 2963.013 kb on + strand, within A4249_RS14625at 2963.014 kb on - strand, within A4249_RS14625at 2963.029 kb on - strand, within A4249_RS14625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
remove
2,960,469 + A4249_RS14610 0.49 +0.2
2,960,469 + A4249_RS14610 0.49 -0.0
2,960,469 + A4249_RS14610 0.49 -1.5
2,960,469 + A4249_RS14610 0.49 -0.3
2,960,469 + A4249_RS14610 0.49 -0.8
2,960,469 + A4249_RS14610 0.49 +0.8
2,960,469 + A4249_RS14610 0.49 -1.2
2,960,469 + A4249_RS14610 0.49 +0.1
2,960,469 + A4249_RS14610 0.49 +0.1
2,960,469 + A4249_RS14610 0.49 +0.7
2,960,469 + A4249_RS14610 0.49 -0.4
2,960,469 + A4249_RS14610 0.49 +0.2
2,960,634 + A4249_RS14610 0.59 -0.1
2,960,634 + A4249_RS14610 0.59 -0.0
2,960,634 + A4249_RS14610 0.59 -0.8
2,960,634 + A4249_RS14610 0.59 -0.9
2,960,634 + A4249_RS14610 0.59 -0.9
2,960,634 + A4249_RS14610 0.59 -0.9
2,960,769 + A4249_RS14610 0.67 -0.1
2,960,784 + A4249_RS14610 0.67 -0.0
2,960,784 + A4249_RS14610 0.67 -0.1
2,960,784 + A4249_RS14610 0.67 +0.5
2,961,241 - +0.6
2,961,246 + -0.1
2,961,246 + -0.0
2,961,246 + -0.9
2,961,246 + +0.3
2,961,247 - +0.0
2,961,247 - -1.0
2,961,247 - -1.3
2,961,247 - +0.5
2,961,279 + -1.4
2,961,279 + -0.7
2,961,279 + -0.5
2,961,280 - -1.2
2,961,331 - +1.0
2,962,277 + +0.2
2,962,277 + -1.2
2,962,278 - -0.2
2,962,297 + -0.3
2,962,298 - -0.6
2,962,372 + -0.1
2,962,372 + -0.6
2,962,372 + +0.6
2,962,372 + +0.6
2,962,373 - A4249_RS14620 0.10 +0.1
2,962,373 - A4249_RS14620 0.10 -0.5
2,962,373 - A4249_RS14620 0.10 -0.0
2,962,373 - A4249_RS14620 0.10 -0.6
2,962,373 - A4249_RS14620 0.10 +0.5
2,962,378 - A4249_RS14620 0.11 -0.4
2,962,378 - A4249_RS14620 0.11 -0.1
2,962,378 - A4249_RS14620 0.11 -0.9
2,962,378 - A4249_RS14620 0.11 -0.1
2,962,608 - A4249_RS14620 0.65 +0.2
2,962,788 + -0.4
2,962,789 - -0.2
2,962,810 + +1.5
2,962,811 - +0.8
2,963,013 + A4249_RS14625 0.16 +0.9
2,963,013 + A4249_RS14625 0.16 -0.8
2,963,013 + A4249_RS14625 0.16 -0.3
2,963,014 - A4249_RS14625 0.17 -0.5
2,963,029 - A4249_RS14625 0.21 +0.2

Or see this region's nucleotide sequence