Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14440

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14435 and A4249_RS14440 are separated by 56 nucleotidesA4249_RS14440 and A4249_RS14445 are separated by 141 nucleotidesA4249_RS14445 and A4249_RS14450 are separated by 0 nucleotides A4249_RS14435: A4249_RS14435 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 2,921,167 to 2,922,693 _RS14435 A4249_RS14440: A4249_RS14440 - glutathione S-transferase family protein, at 2,922,750 to 2,923,361 _RS14440 A4249_RS14445: A4249_RS14445 - hypothetical protein, at 2,923,503 to 2,923,865 _RS14445 A4249_RS14450: A4249_RS14450 - peptide chain release factor 1, at 2,923,866 to 2,924,933 _RS14450 Position (kb) 2922 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2922.762 kb on + strandat 2922.797 kb on + strandat 2922.825 kb on + strand, within A4249_RS14440at 2922.825 kb on + strand, within A4249_RS14440at 2922.825 kb on + strand, within A4249_RS14440at 2922.825 kb on + strand, within A4249_RS14440at 2922.826 kb on - strand, within A4249_RS14440at 2922.826 kb on - strand, within A4249_RS14440at 2922.876 kb on + strand, within A4249_RS14440at 2922.876 kb on + strand, within A4249_RS14440at 2923.041 kb on + strand, within A4249_RS14440at 2923.041 kb on + strand, within A4249_RS14440at 2923.042 kb on - strand, within A4249_RS14440at 2923.042 kb on - strand, within A4249_RS14440at 2923.042 kb on - strand, within A4249_RS14440at 2923.212 kb on + strand, within A4249_RS14440at 2923.212 kb on + strand, within A4249_RS14440at 2923.213 kb on - strand, within A4249_RS14440at 2923.213 kb on - strand, within A4249_RS14440at 2923.213 kb on - strand, within A4249_RS14440at 2923.213 kb on - strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.214 kb on + strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.215 kb on - strand, within A4249_RS14440at 2923.230 kb on + strand, within A4249_RS14440at 2923.392 kb on + strandat 2923.443 kb on + strandat 2923.443 kb on + strandat 2923.443 kb on + strandat 2923.444 kb on - strandat 2923.444 kb on - strandat 2923.444 kb on - strandat 2923.466 kb on + strandat 2923.466 kb on + strandat 2923.467 kb on - strandat 2923.499 kb on - strandat 2923.509 kb on + strandat 2923.509 kb on + strandat 2923.509 kb on + strandat 2923.509 kb on + strandat 2923.510 kb on - strandat 2923.510 kb on - strandat 2923.510 kb on - strandat 2923.510 kb on - strandat 2923.510 kb on - strandat 2923.510 kb on - strandat 2923.536 kb on + strandat 2923.537 kb on - strandat 2923.728 kb on + strand, within A4249_RS14445at 2923.729 kb on - strand, within A4249_RS14445at 2923.810 kb on - strand, within A4249_RS14445at 2923.810 kb on - strand, within A4249_RS14445at 2923.811 kb on + strand, within A4249_RS14445at 2923.812 kb on - strand, within A4249_RS14445at 2923.812 kb on - strand, within A4249_RS14445

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,922,762 + -0.0
2,922,797 + +0.0
2,922,825 + A4249_RS14440 0.12 -0.0
2,922,825 + A4249_RS14440 0.12 +0.1
2,922,825 + A4249_RS14440 0.12 -1.0
2,922,825 + A4249_RS14440 0.12 +0.1
2,922,826 - A4249_RS14440 0.12 -0.3
2,922,826 - A4249_RS14440 0.12 +0.6
2,922,876 + A4249_RS14440 0.21 -0.2
2,922,876 + A4249_RS14440 0.21 +0.6
2,923,041 + A4249_RS14440 0.48 -0.0
2,923,041 + A4249_RS14440 0.48 +0.3
2,923,042 - A4249_RS14440 0.48 -1.4
2,923,042 - A4249_RS14440 0.48 +0.6
2,923,042 - A4249_RS14440 0.48 +0.3
2,923,212 + A4249_RS14440 0.75 +0.2
2,923,212 + A4249_RS14440 0.75 -0.5
2,923,213 - A4249_RS14440 0.76 +0.3
2,923,213 - A4249_RS14440 0.76 +0.5
2,923,213 - A4249_RS14440 0.76 -0.1
2,923,213 - A4249_RS14440 0.76 -0.7
2,923,214 + A4249_RS14440 0.76 -0.0
2,923,214 + A4249_RS14440 0.76 +0.6
2,923,214 + A4249_RS14440 0.76 -0.6
2,923,214 + A4249_RS14440 0.76 -0.8
2,923,214 + A4249_RS14440 0.76 -0.6
2,923,214 + A4249_RS14440 0.76 -0.9
2,923,214 + A4249_RS14440 0.76 +0.3
2,923,214 + A4249_RS14440 0.76 -0.2
2,923,214 + A4249_RS14440 0.76 +1.5
2,923,215 - A4249_RS14440 0.76 +0.6
2,923,215 - A4249_RS14440 0.76 -0.4
2,923,215 - A4249_RS14440 0.76 -1.2
2,923,215 - A4249_RS14440 0.76 -0.4
2,923,215 - A4249_RS14440 0.76 -0.3
2,923,215 - A4249_RS14440 0.76 -0.2
2,923,215 - A4249_RS14440 0.76 -0.2
2,923,215 - A4249_RS14440 0.76 -1.0
2,923,215 - A4249_RS14440 0.76 +0.2
2,923,215 - A4249_RS14440 0.76 +0.3
2,923,215 - A4249_RS14440 0.76 +0.6
2,923,215 - A4249_RS14440 0.76 +1.0
2,923,215 - A4249_RS14440 0.76 -1.8
2,923,230 + A4249_RS14440 0.78 +0.0
2,923,392 + +0.4
2,923,443 + +3.0
2,923,443 + +0.2
2,923,443 + -0.7
2,923,444 - +1.2
2,923,444 - -0.3
2,923,444 - +0.0
2,923,466 + -1.2
2,923,466 + -0.1
2,923,467 - +0.0
2,923,499 - +0.3
2,923,509 + -1.0
2,923,509 + +1.2
2,923,509 + +0.8
2,923,509 + +0.5
2,923,510 - +0.6
2,923,510 - -0.5
2,923,510 - +1.6
2,923,510 - -0.6
2,923,510 - -0.5
2,923,510 - -0.6
2,923,536 + -0.4
2,923,537 - +0.3
2,923,728 + A4249_RS14445 0.62 +0.2
2,923,729 - A4249_RS14445 0.62 -0.4
2,923,810 - A4249_RS14445 0.85 +1.9
2,923,810 - A4249_RS14445 0.85 -1.1
2,923,811 + A4249_RS14445 0.85 +0.2
2,923,812 - A4249_RS14445 0.85 +1.2
2,923,812 - A4249_RS14445 0.85 -0.4

Or see this region's nucleotide sequence