Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13960

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13950 and A4249_RS13955 are separated by 29 nucleotidesA4249_RS13955 and A4249_RS13960 are separated by 3 nucleotidesA4249_RS13960 and A4249_RS13965 overlap by 4 nucleotidesA4249_RS13965 and A4249_RS13970 are separated by 123 nucleotides A4249_RS13950: A4249_RS13950 - 2-polyprenylphenol 6-hydroxylase, at 2,813,366 to 2,814,946 _RS13950 A4249_RS13955: A4249_RS13955 - hypothetical protein, at 2,814,976 to 2,815,434 _RS13955 A4249_RS13960: A4249_RS13960 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 2,815,438 to 2,815,842 _RS13960 A4249_RS13965: A4249_RS13965 - YaiI/YqxD family protein, at 2,815,839 to 2,816,297 _RS13965 A4249_RS13970: A4249_RS13970 - amidohydrolase family protein, at 2,816,421 to 2,817,761 _RS13970 Position (kb) 2815 2816Strain fitness (log2 ratio) -2 -1 0 1at 2814.935 kb on + strandat 2814.935 kb on + strandat 2814.936 kb on - strandat 2814.936 kb on - strandat 2814.961 kb on - strandat 2814.961 kb on - strandat 2815.207 kb on + strand, within A4249_RS13955at 2815.306 kb on + strand, within A4249_RS13955at 2815.306 kb on + strand, within A4249_RS13955at 2815.306 kb on + strand, within A4249_RS13955at 2815.306 kb on + strand, within A4249_RS13955at 2815.307 kb on - strand, within A4249_RS13955at 2815.307 kb on - strand, within A4249_RS13955at 2815.307 kb on - strand, within A4249_RS13955at 2815.307 kb on - strand, within A4249_RS13955at 2815.307 kb on - strand, within A4249_RS13955at 2815.338 kb on + strand, within A4249_RS13955at 2815.338 kb on + strand, within A4249_RS13955at 2815.338 kb on + strand, within A4249_RS13955at 2815.339 kb on - strand, within A4249_RS13955at 2815.339 kb on - strand, within A4249_RS13955at 2815.339 kb on - strand, within A4249_RS13955at 2815.545 kb on - strand, within A4249_RS13960at 2815.545 kb on - strand, within A4249_RS13960at 2815.800 kb on - strand, within A4249_RS13960at 2815.800 kb on - strand, within A4249_RS13960at 2815.938 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.243 kb on - strand, within A4249_RS13965at 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.282 kb on - strandat 2816.282 kb on - strandat 2816.282 kb on - strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.311 kb on + strandat 2816.326 kb on + strandat 2816.327 kb on - strandat 2816.327 kb on - strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.431 kb on + strandat 2816.704 kb on + strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,814,935 + +0.2
2,814,935 + +0.4
2,814,936 - +0.3
2,814,936 - -0.3
2,814,961 - -0.2
2,814,961 - +0.2
2,815,207 + A4249_RS13955 0.50 -0.4
2,815,306 + A4249_RS13955 0.72 -0.5
2,815,306 + A4249_RS13955 0.72 +0.8
2,815,306 + A4249_RS13955 0.72 +0.5
2,815,306 + A4249_RS13955 0.72 +0.7
2,815,307 - A4249_RS13955 0.72 +0.6
2,815,307 - A4249_RS13955 0.72 +0.8
2,815,307 - A4249_RS13955 0.72 -0.6
2,815,307 - A4249_RS13955 0.72 +0.2
2,815,307 - A4249_RS13955 0.72 +1.6
2,815,338 + A4249_RS13955 0.79 +0.7
2,815,338 + A4249_RS13955 0.79 -0.2
2,815,338 + A4249_RS13955 0.79 -0.2
2,815,339 - A4249_RS13955 0.79 +0.5
2,815,339 - A4249_RS13955 0.79 +0.2
2,815,339 - A4249_RS13955 0.79 +0.8
2,815,545 - A4249_RS13960 0.26 +1.6
2,815,545 - A4249_RS13960 0.26 +1.6
2,815,800 - A4249_RS13960 0.89 +0.5
2,815,800 - A4249_RS13960 0.89 -0.0
2,815,938 + A4249_RS13965 0.22 -0.7
2,816,070 + A4249_RS13965 0.50 +0.4
2,816,070 + A4249_RS13965 0.50 +0.2
2,816,070 + A4249_RS13965 0.50 -0.6
2,816,070 + A4249_RS13965 0.50 +0.1
2,816,070 + A4249_RS13965 0.50 +0.1
2,816,070 + A4249_RS13965 0.50 -0.2
2,816,071 - A4249_RS13965 0.51 +0.4
2,816,071 - A4249_RS13965 0.51 -0.4
2,816,071 - A4249_RS13965 0.51 -1.5
2,816,071 - A4249_RS13965 0.51 +0.7
2,816,071 - A4249_RS13965 0.51 -0.2
2,816,071 - A4249_RS13965 0.51 -0.1
2,816,098 - A4249_RS13965 0.56 -1.2
2,816,098 - A4249_RS13965 0.56 +1.6
2,816,098 - A4249_RS13965 0.56 -0.7
2,816,209 + A4249_RS13965 0.81 -0.3
2,816,209 + A4249_RS13965 0.81 -0.3
2,816,209 + A4249_RS13965 0.81 +0.2
2,816,209 + A4249_RS13965 0.81 +0.3
2,816,209 + A4249_RS13965 0.81 -0.4
2,816,209 + A4249_RS13965 0.81 -1.1
2,816,209 + A4249_RS13965 0.81 -0.1
2,816,209 + A4249_RS13965 0.81 -0.5
2,816,209 + A4249_RS13965 0.81 -0.9
2,816,209 + A4249_RS13965 0.81 -0.0
2,816,209 + A4249_RS13965 0.81 +0.8
2,816,209 + A4249_RS13965 0.81 -0.4
2,816,210 - A4249_RS13965 0.81 -0.2
2,816,210 - A4249_RS13965 0.81 -0.1
2,816,210 - A4249_RS13965 0.81 +0.1
2,816,210 - A4249_RS13965 0.81 -0.5
2,816,210 - A4249_RS13965 0.81 -1.4
2,816,210 - A4249_RS13965 0.81 -0.9
2,816,210 - A4249_RS13965 0.81 -0.6
2,816,242 + A4249_RS13965 0.88 +0.7
2,816,242 + A4249_RS13965 0.88 -0.4
2,816,242 + A4249_RS13965 0.88 -0.4
2,816,242 + A4249_RS13965 0.88 +0.1
2,816,242 + A4249_RS13965 0.88 +0.4
2,816,242 + A4249_RS13965 0.88 -2.6
2,816,243 - A4249_RS13965 0.88 -0.8
2,816,281 + +0.1
2,816,281 + -0.1
2,816,281 + +0.1
2,816,281 + +0.6
2,816,281 + -0.7
2,816,282 - -0.2
2,816,282 - -1.2
2,816,282 - +0.2
2,816,297 + +0.2
2,816,297 + -0.8
2,816,297 + -0.6
2,816,297 + -0.9
2,816,298 - +0.3
2,816,298 - +1.0
2,816,298 - +0.2
2,816,298 - -0.4
2,816,298 - +0.9
2,816,298 - +0.4
2,816,311 + +0.5
2,816,326 + -0.3
2,816,327 - -0.0
2,816,327 - +1.6
2,816,342 + +0.8
2,816,342 + +0.1
2,816,342 + +0.8
2,816,342 + +1.4
2,816,343 - +0.6
2,816,343 - +0.0
2,816,343 - -0.0
2,816,343 - +0.3
2,816,431 + +0.3
2,816,704 + A4249_RS13970 0.21 -0.5
2,816,705 - A4249_RS13970 0.21 -0.3
2,816,705 - A4249_RS13970 0.21 +0.4
2,816,705 - A4249_RS13970 0.21 +0.3

Or see this region's nucleotide sequence