Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13440

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13430 and A4249_RS13435 are separated by 1 nucleotidesA4249_RS13435 and A4249_RS13440 are separated by 53 nucleotidesA4249_RS13440 and A4249_RS13445 are separated by 1 nucleotidesA4249_RS13445 and A4249_RS13450 are separated by 9 nucleotides A4249_RS13430: A4249_RS13430 - succinate dehydrogenase flavoprotein subunit, at 2,713,398 to 2,715,182 _RS13430 A4249_RS13435: A4249_RS13435 - succinate dehydrogenase iron-sulfur subunit, at 2,715,184 to 2,715,978 _RS13435 A4249_RS13440: A4249_RS13440 - 2Fe-2S iron-sulfur cluster-binding protein, at 2,716,032 to 2,716,352 _RS13440 A4249_RS13445: A4249_RS13445 - kinase, at 2,716,354 to 2,717,169 _RS13445 A4249_RS13450: A4249_RS13450 - PilZ domain-containing protein, at 2,717,179 to 2,717,541 _RS13450 Position (kb) 2716 2717Strain fitness (log2 ratio) -1 0 1at 2716.020 kb on + strandat 2716.020 kb on + strandat 2716.020 kb on + strandat 2716.021 kb on - strandat 2716.021 kb on - strandat 2716.021 kb on - strandat 2716.442 kb on + strand, within A4249_RS13445at 2716.442 kb on + strand, within A4249_RS13445at 2716.443 kb on - strand, within A4249_RS13445at 2716.537 kb on + strand, within A4249_RS13445at 2716.537 kb on + strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.785 kb on - strand, within A4249_RS13445at 2716.901 kb on - strand, within A4249_RS13445at 2716.901 kb on - strand, within A4249_RS13445at 2717.016 kb on - strand, within A4249_RS13445at 2717.027 kb on + strand, within A4249_RS13445at 2717.028 kb on - strand, within A4249_RS13445at 2717.028 kb on - strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.059 kb on + strand, within A4249_RS13445at 2717.060 kb on - strand, within A4249_RS13445at 2717.060 kb on - strand, within A4249_RS13445at 2717.060 kb on - strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.079 kb on + strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445at 2717.080 kb on - strand, within A4249_RS13445

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,716,020 + +0.7
2,716,020 + -0.3
2,716,020 + -0.3
2,716,021 - -0.8
2,716,021 - +1.7
2,716,021 - +0.5
2,716,442 + A4249_RS13445 0.11 +0.1
2,716,442 + A4249_RS13445 0.11 +0.3
2,716,443 - A4249_RS13445 0.11 -0.5
2,716,537 + A4249_RS13445 0.22 -0.1
2,716,537 + A4249_RS13445 0.22 -0.6
2,716,538 - A4249_RS13445 0.23 +0.2
2,716,538 - A4249_RS13445 0.23 +0.7
2,716,538 - A4249_RS13445 0.23 +0.1
2,716,538 - A4249_RS13445 0.23 -0.2
2,716,538 - A4249_RS13445 0.23 +0.4
2,716,538 - A4249_RS13445 0.23 -0.1
2,716,785 - A4249_RS13445 0.53 +0.2
2,716,901 - A4249_RS13445 0.67 -0.6
2,716,901 - A4249_RS13445 0.67 -0.5
2,717,016 - A4249_RS13445 0.81 -0.6
2,717,027 + A4249_RS13445 0.82 -0.8
2,717,028 - A4249_RS13445 0.83 -0.2
2,717,028 - A4249_RS13445 0.83 -0.6
2,717,059 + A4249_RS13445 0.86 -0.4
2,717,059 + A4249_RS13445 0.86 -0.8
2,717,059 + A4249_RS13445 0.86 -0.1
2,717,059 + A4249_RS13445 0.86 +0.5
2,717,059 + A4249_RS13445 0.86 -0.4
2,717,059 + A4249_RS13445 0.86 +0.2
2,717,059 + A4249_RS13445 0.86 -0.1
2,717,059 + A4249_RS13445 0.86 -0.5
2,717,060 - A4249_RS13445 0.87 -0.6
2,717,060 - A4249_RS13445 0.87 -0.6
2,717,060 - A4249_RS13445 0.87 -0.1
2,717,079 + A4249_RS13445 0.89 +0.5
2,717,079 + A4249_RS13445 0.89 -0.7
2,717,079 + A4249_RS13445 0.89 +0.1
2,717,079 + A4249_RS13445 0.89 -0.1
2,717,079 + A4249_RS13445 0.89 -0.1
2,717,079 + A4249_RS13445 0.89 -0.0
2,717,079 + A4249_RS13445 0.89 +1.2
2,717,079 + A4249_RS13445 0.89 -0.3
2,717,079 + A4249_RS13445 0.89 +0.3
2,717,079 + A4249_RS13445 0.89 -0.6
2,717,079 + A4249_RS13445 0.89 +1.3
2,717,080 - A4249_RS13445 0.89 -0.2
2,717,080 - A4249_RS13445 0.89 +0.9
2,717,080 - A4249_RS13445 0.89 +0.1
2,717,080 - A4249_RS13445 0.89 -0.1
2,717,080 - A4249_RS13445 0.89 -0.6
2,717,080 - A4249_RS13445 0.89 -0.9
2,717,080 - A4249_RS13445 0.89 +0.7
2,717,080 - A4249_RS13445 0.89 -0.9
2,717,080 - A4249_RS13445 0.89 -0.0
2,717,080 - A4249_RS13445 0.89 -1.1
2,717,080 - A4249_RS13445 0.89 -0.3
2,717,080 - A4249_RS13445 0.89 -0.8

Or see this region's nucleotide sequence