Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13130

Experiment: Xanthine 0.6574 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13120 and A4249_RS13125 are separated by 64 nucleotidesA4249_RS13125 and A4249_RS13130 are separated by 66 nucleotidesA4249_RS13130 and A4249_RS13135 are separated by 44 nucleotidesA4249_RS13135 and A4249_RS13140 are separated by 24 nucleotides A4249_RS13120: A4249_RS13120 - hypothetical protein, at 2,639,784 to 2,640,245 _RS13120 A4249_RS13125: A4249_RS13125 - ribonuclease PH, at 2,640,310 to 2,641,035 _RS13125 A4249_RS13130: A4249_RS13130 - heat-inducible transcriptional repressor HrcA, at 2,641,102 to 2,642,196 _RS13130 A4249_RS13135: A4249_RS13135 - nucleotide exchange factor GrpE, at 2,642,241 to 2,642,828 _RS13135 A4249_RS13140: A4249_RS13140 - S8 family peptidase, at 2,642,853 to 2,644,895 _RS13140 Position (kb) 2641 2642 2643Strain fitness (log2 ratio) -1 0 1at 2640.311 kb on + strandat 2640.507 kb on - strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.848 kb on + strand, within A4249_RS13125at 2640.849 kb on - strand, within A4249_RS13125at 2641.084 kb on + strandat 2641.084 kb on + strandat 2641.084 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.207 kb on + strandat 2641.207 kb on + strandat 2641.207 kb on + strandat 2641.208 kb on - strandat 2641.208 kb on - strandat 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.411 kb on - strand, within A4249_RS13130at 2641.411 kb on - strand, within A4249_RS13130at 2642.059 kb on + strand, within A4249_RS13130at 2642.060 kb on - strand, within A4249_RS13130at 2642.060 kb on - strand, within A4249_RS13130at 2642.060 kb on - strand, within A4249_RS13130at 2642.060 kb on - strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.061 kb on + strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.062 kb on - strand, within A4249_RS13130at 2642.102 kb on + strandat 2642.103 kb on - strandat 2642.103 kb on - strandat 2642.103 kb on - strandat 2642.122 kb on + strandat 2642.122 kb on + strandat 2642.122 kb on + strandat 2642.122 kb on + strandat 2642.123 kb on - strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.149 kb on + strandat 2642.150 kb on - strandat 2642.150 kb on - strandat 2642.150 kb on - strandat 2642.150 kb on - strandat 2642.152 kb on - strandat 2642.221 kb on + strandat 2642.222 kb on - strandat 2642.987 kb on + strandat 2642.988 kb on - strandat 2642.988 kb on - strandat 2643.037 kb on + strandat 2643.037 kb on + strandat 2643.037 kb on + strandat 2643.037 kb on + strandat 2643.037 kb on + strandat 2643.037 kb on + strandat 2643.038 kb on - strandat 2643.055 kb on + strandat 2643.056 kb on - strandat 2643.066 kb on + strand, within A4249_RS13140at 2643.066 kb on + strand, within A4249_RS13140at 2643.066 kb on + strand, within A4249_RS13140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
remove
2,640,311 + -0.4
2,640,507 - A4249_RS13125 0.27 -0.2
2,640,608 + A4249_RS13125 0.41 +1.0
2,640,608 + A4249_RS13125 0.41 +0.9
2,640,608 + A4249_RS13125 0.41 -0.2
2,640,609 - A4249_RS13125 0.41 -1.7
2,640,609 - A4249_RS13125 0.41 -0.7
2,640,609 - A4249_RS13125 0.41 -0.0
2,640,848 + A4249_RS13125 0.74 -0.8
2,640,849 - A4249_RS13125 0.74 -1.5
2,641,084 + -1.1
2,641,084 + -0.0
2,641,084 + -0.8
2,641,105 + -0.7
2,641,105 + -0.6
2,641,105 + -0.8
2,641,105 + -0.5
2,641,105 + -0.6
2,641,106 - -0.2
2,641,106 - -0.1
2,641,106 - -0.3
2,641,106 - +0.7
2,641,106 - +0.8
2,641,207 + -0.3
2,641,207 + -1.0
2,641,207 + +0.3
2,641,208 - +0.3
2,641,208 - +0.1
2,641,410 + A4249_RS13130 0.28 +0.2
2,641,410 + A4249_RS13130 0.28 -1.2
2,641,410 + A4249_RS13130 0.28 +1.0
2,641,410 + A4249_RS13130 0.28 +0.1
2,641,411 - A4249_RS13130 0.28 +1.1
2,641,411 - A4249_RS13130 0.28 +0.9
2,642,059 + A4249_RS13130 0.87 -0.1
2,642,060 - A4249_RS13130 0.87 +0.1
2,642,060 - A4249_RS13130 0.87 +0.3
2,642,060 - A4249_RS13130 0.87 -0.7
2,642,060 - A4249_RS13130 0.87 -0.7
2,642,061 + A4249_RS13130 0.88 +0.4
2,642,061 + A4249_RS13130 0.88 -0.3
2,642,061 + A4249_RS13130 0.88 +0.3
2,642,061 + A4249_RS13130 0.88 +1.2
2,642,061 + A4249_RS13130 0.88 +0.1
2,642,061 + A4249_RS13130 0.88 -0.1
2,642,061 + A4249_RS13130 0.88 +0.5
2,642,062 - A4249_RS13130 0.88 -0.8
2,642,062 - A4249_RS13130 0.88 -1.0
2,642,062 - A4249_RS13130 0.88 +1.0
2,642,062 - A4249_RS13130 0.88 +0.4
2,642,062 - A4249_RS13130 0.88 -0.6
2,642,062 - A4249_RS13130 0.88 +0.8
2,642,062 - A4249_RS13130 0.88 +0.3
2,642,062 - A4249_RS13130 0.88 +0.6
2,642,062 - A4249_RS13130 0.88 -0.7
2,642,062 - A4249_RS13130 0.88 +0.6
2,642,062 - A4249_RS13130 0.88 +0.5
2,642,102 + +0.6
2,642,103 - -0.5
2,642,103 - -0.7
2,642,103 - -0.4
2,642,122 + -0.3
2,642,122 + -1.4
2,642,122 + -1.2
2,642,122 + -0.1
2,642,123 - +0.2
2,642,149 + -0.7
2,642,149 + -1.2
2,642,149 + +1.0
2,642,149 + +0.6
2,642,149 + -0.9
2,642,149 + +0.1
2,642,149 + +0.6
2,642,150 - +0.5
2,642,150 - -0.1
2,642,150 - +0.6
2,642,150 - -0.1
2,642,152 - +0.0
2,642,221 + -0.0
2,642,222 - +1.2
2,642,987 + +0.8
2,642,988 - -1.2
2,642,988 - -0.7
2,643,037 + +1.1
2,643,037 + +0.0
2,643,037 + +0.6
2,643,037 + -0.3
2,643,037 + +0.4
2,643,037 + -1.2
2,643,038 - -0.3
2,643,055 + -0.5
2,643,056 - +0.8
2,643,066 + A4249_RS13140 0.10 +0.3
2,643,066 + A4249_RS13140 0.10 -0.9
2,643,066 + A4249_RS13140 0.10 +0.6

Or see this region's nucleotide sequence