Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12915

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12905 and A4249_RS12910 overlap by 4 nucleotidesA4249_RS12910 and A4249_RS12915 are separated by 142 nucleotidesA4249_RS12915 and A4249_RS12920 are separated by 3 nucleotides A4249_RS12905: A4249_RS12905 - DNA repair putative endonuclease MmcB, at 2,588,699 to 2,589,142 _RS12905 A4249_RS12910: A4249_RS12910 - NlpC/P60 family protein, at 2,589,139 to 2,589,921 _RS12910 A4249_RS12915: A4249_RS12915 - hypothetical protein, at 2,590,064 to 2,590,585 _RS12915 A4249_RS12920: A4249_RS12920 - leucyl aminopeptidase family protein, at 2,590,589 to 2,591,974 _RS12920 Position (kb) 2590 2591Strain fitness (log2 ratio) -1 0 1 2at 2589.140 kb on + strandat 2589.953 kb on - strandat 2590.390 kb on - strand, within A4249_RS12915at 2590.401 kb on + strand, within A4249_RS12915at 2590.402 kb on - strand, within A4249_RS12915at 2590.599 kb on + strandat 2590.599 kb on + strandat 2590.600 kb on - strandat 2590.620 kb on + strandat 2590.620 kb on + strandat 2590.620 kb on + strandat 2590.621 kb on - strandat 2590.621 kb on - strandat 2590.621 kb on - strandat 2590.631 kb on + strandat 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2591.224 kb on + strand, within A4249_RS12920at 2591.224 kb on + strand, within A4249_RS12920at 2591.225 kb on - strand, within A4249_RS12920at 2591.235 kb on + strand, within A4249_RS12920at 2591.236 kb on + strand, within A4249_RS12920at 2591.236 kb on + strand, within A4249_RS12920at 2591.236 kb on + strand, within A4249_RS12920at 2591.236 kb on + strand, within A4249_RS12920at 2591.236 kb on + strand, within A4249_RS12920at 2591.409 kb on + strand, within A4249_RS12920at 2591.409 kb on + strand, within A4249_RS12920at 2591.409 kb on + strand, within A4249_RS12920at 2591.410 kb on - strand, within A4249_RS12920at 2591.410 kb on - strand, within A4249_RS12920at 2591.410 kb on - strand, within A4249_RS12920at 2591.524 kb on + strand, within A4249_RS12920

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,589,140 + +0.5
2,589,953 - -1.1
2,590,390 - A4249_RS12915 0.62 -0.4
2,590,401 + A4249_RS12915 0.65 -0.2
2,590,402 - A4249_RS12915 0.65 -0.4
2,590,599 + +0.3
2,590,599 + -0.2
2,590,600 - -0.4
2,590,620 + -0.0
2,590,620 + -0.2
2,590,620 + +0.4
2,590,621 - +0.2
2,590,621 - +0.2
2,590,621 - +0.2
2,590,631 + +1.0
2,590,915 + A4249_RS12920 0.24 +0.9
2,590,915 + A4249_RS12920 0.24 +0.2
2,590,915 + A4249_RS12920 0.24 +0.5
2,590,915 + A4249_RS12920 0.24 +0.4
2,590,915 + A4249_RS12920 0.24 -0.5
2,590,916 - A4249_RS12920 0.24 +0.2
2,590,916 - A4249_RS12920 0.24 +0.8
2,590,916 - A4249_RS12920 0.24 +0.3
2,590,916 - A4249_RS12920 0.24 +0.1
2,590,916 - A4249_RS12920 0.24 +0.4
2,590,916 - A4249_RS12920 0.24 -1.2
2,590,917 + A4249_RS12920 0.24 +0.4
2,590,917 + A4249_RS12920 0.24 +0.4
2,590,917 + A4249_RS12920 0.24 -0.9
2,590,917 + A4249_RS12920 0.24 +1.2
2,590,917 + A4249_RS12920 0.24 -0.6
2,590,917 + A4249_RS12920 0.24 -1.0
2,590,917 + A4249_RS12920 0.24 +0.5
2,590,918 - A4249_RS12920 0.24 +0.1
2,590,918 - A4249_RS12920 0.24 -0.3
2,590,918 - A4249_RS12920 0.24 +0.4
2,590,918 - A4249_RS12920 0.24 -0.4
2,591,224 + A4249_RS12920 0.46 -0.0
2,591,224 + A4249_RS12920 0.46 -0.8
2,591,225 - A4249_RS12920 0.46 +0.9
2,591,235 + A4249_RS12920 0.47 -0.0
2,591,236 + A4249_RS12920 0.47 -0.5
2,591,236 + A4249_RS12920 0.47 +0.4
2,591,236 + A4249_RS12920 0.47 +0.2
2,591,236 + A4249_RS12920 0.47 +0.1
2,591,236 + A4249_RS12920 0.47 -0.2
2,591,409 + A4249_RS12920 0.59 -0.1
2,591,409 + A4249_RS12920 0.59 +0.6
2,591,409 + A4249_RS12920 0.59 +0.1
2,591,410 - A4249_RS12920 0.59 -0.5
2,591,410 - A4249_RS12920 0.59 -0.3
2,591,410 - A4249_RS12920 0.59 -0.6
2,591,524 + A4249_RS12920 0.67 +1.8

Or see this region's nucleotide sequence