Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12905 and A4249_RS12910 overlap by 4 nucleotides A4249_RS12910 and A4249_RS12915 are separated by 142 nucleotides A4249_RS12915 and A4249_RS12920 are separated by 3 nucleotides
A4249_RS12905: A4249_RS12905 - DNA repair putative endonuclease MmcB, at 2,588,699 to 2,589,142
_RS12905
A4249_RS12910: A4249_RS12910 - NlpC/P60 family protein, at 2,589,139 to 2,589,921
_RS12910
A4249_RS12915: A4249_RS12915 - hypothetical protein, at 2,590,064 to 2,590,585
_RS12915
A4249_RS12920: A4249_RS12920 - leucyl aminopeptidase family protein, at 2,590,589 to 2,591,974
_RS12920
Position (kb)
2590
2591 Strain fitness (log2 ratio)
-1
0
1
2 at 2589.140 kb on + strand at 2589.953 kb on - strand at 2590.390 kb on - strand, within A4249_RS12915 at 2590.401 kb on + strand, within A4249_RS12915 at 2590.402 kb on - strand, within A4249_RS12915 at 2590.599 kb on + strand at 2590.599 kb on + strand at 2590.600 kb on - strand at 2590.620 kb on + strand at 2590.620 kb on + strand at 2590.620 kb on + strand at 2590.621 kb on - strand at 2590.621 kb on - strand at 2590.621 kb on - strand at 2590.631 kb on + strand at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2591.224 kb on + strand, within A4249_RS12920 at 2591.224 kb on + strand, within A4249_RS12920 at 2591.225 kb on - strand, within A4249_RS12920 at 2591.235 kb on + strand, within A4249_RS12920 at 2591.236 kb on + strand, within A4249_RS12920 at 2591.236 kb on + strand, within A4249_RS12920 at 2591.236 kb on + strand, within A4249_RS12920 at 2591.236 kb on + strand, within A4249_RS12920 at 2591.236 kb on + strand, within A4249_RS12920 at 2591.409 kb on + strand, within A4249_RS12920 at 2591.409 kb on + strand, within A4249_RS12920 at 2591.409 kb on + strand, within A4249_RS12920 at 2591.410 kb on - strand, within A4249_RS12920 at 2591.410 kb on - strand, within A4249_RS12920 at 2591.410 kb on - strand, within A4249_RS12920 at 2591.524 kb on + strand, within A4249_RS12920
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 2,589,140 + +0.5 2,589,953 - -1.1 2,590,390 - A4249_RS12915 0.62 -0.4 2,590,401 + A4249_RS12915 0.65 -0.2 2,590,402 - A4249_RS12915 0.65 -0.4 2,590,599 + +0.3 2,590,599 + -0.2 2,590,600 - -0.4 2,590,620 + -0.0 2,590,620 + -0.2 2,590,620 + +0.4 2,590,621 - +0.2 2,590,621 - +0.2 2,590,621 - +0.2 2,590,631 + +1.0 2,590,915 + A4249_RS12920 0.24 +0.9 2,590,915 + A4249_RS12920 0.24 +0.2 2,590,915 + A4249_RS12920 0.24 +0.5 2,590,915 + A4249_RS12920 0.24 +0.4 2,590,915 + A4249_RS12920 0.24 -0.5 2,590,916 - A4249_RS12920 0.24 +0.2 2,590,916 - A4249_RS12920 0.24 +0.8 2,590,916 - A4249_RS12920 0.24 +0.3 2,590,916 - A4249_RS12920 0.24 +0.1 2,590,916 - A4249_RS12920 0.24 +0.4 2,590,916 - A4249_RS12920 0.24 -1.2 2,590,917 + A4249_RS12920 0.24 +0.4 2,590,917 + A4249_RS12920 0.24 +0.4 2,590,917 + A4249_RS12920 0.24 -0.9 2,590,917 + A4249_RS12920 0.24 +1.2 2,590,917 + A4249_RS12920 0.24 -0.6 2,590,917 + A4249_RS12920 0.24 -1.0 2,590,917 + A4249_RS12920 0.24 +0.5 2,590,918 - A4249_RS12920 0.24 +0.1 2,590,918 - A4249_RS12920 0.24 -0.3 2,590,918 - A4249_RS12920 0.24 +0.4 2,590,918 - A4249_RS12920 0.24 -0.4 2,591,224 + A4249_RS12920 0.46 -0.0 2,591,224 + A4249_RS12920 0.46 -0.8 2,591,225 - A4249_RS12920 0.46 +0.9 2,591,235 + A4249_RS12920 0.47 -0.0 2,591,236 + A4249_RS12920 0.47 -0.5 2,591,236 + A4249_RS12920 0.47 +0.4 2,591,236 + A4249_RS12920 0.47 +0.2 2,591,236 + A4249_RS12920 0.47 +0.1 2,591,236 + A4249_RS12920 0.47 -0.2 2,591,409 + A4249_RS12920 0.59 -0.1 2,591,409 + A4249_RS12920 0.59 +0.6 2,591,409 + A4249_RS12920 0.59 +0.1 2,591,410 - A4249_RS12920 0.59 -0.5 2,591,410 - A4249_RS12920 0.59 -0.3 2,591,410 - A4249_RS12920 0.59 -0.6 2,591,524 + A4249_RS12920 0.67 +1.8
Or see this region's nucleotide sequence