Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12745

Experiment: Xanthine 0.6574 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS12740 and A4249_RS12745 are separated by 5 nucleotidesA4249_RS12745 and A4249_RS12750 are separated by 68 nucleotides A4249_RS12740: A4249_RS12740 - TerC family protein, at 2,555,953 to 2,556,780 _RS12740 A4249_RS12745: A4249_RS12745 - glutaminyl-peptide cyclotransferase, at 2,556,786 to 2,557,559 _RS12745 A4249_RS12750: A4249_RS12750 - catalase/peroxidase HPI, at 2,557,628 to 2,559,898 _RS12750 Position (kb) 2556 2557 2558Strain fitness (log2 ratio) -2 -1 0 1at 2555.912 kb on - strandat 2555.966 kb on + strandat 2555.967 kb on - strandat 2556.596 kb on - strand, within A4249_RS12740at 2556.613 kb on + strand, within A4249_RS12740at 2556.613 kb on + strand, within A4249_RS12740at 2556.613 kb on + strand, within A4249_RS12740at 2556.613 kb on + strand, within A4249_RS12740at 2556.613 kb on + strand, within A4249_RS12740at 2556.614 kb on - strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.619 kb on + strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.620 kb on - strand, within A4249_RS12740at 2556.885 kb on + strand, within A4249_RS12745at 2556.886 kb on - strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.960 kb on + strand, within A4249_RS12745at 2556.961 kb on - strand, within A4249_RS12745at 2556.979 kb on - strand, within A4249_RS12745at 2556.995 kb on + strand, within A4249_RS12745at 2556.996 kb on - strand, within A4249_RS12745at 2556.996 kb on - strand, within A4249_RS12745at 2557.050 kb on + strand, within A4249_RS12745at 2557.050 kb on + strand, within A4249_RS12745at 2557.051 kb on - strand, within A4249_RS12745at 2557.051 kb on - strand, within A4249_RS12745at 2557.051 kb on - strand, within A4249_RS12745at 2557.051 kb on - strand, within A4249_RS12745at 2557.089 kb on + strand, within A4249_RS12745at 2557.089 kb on + strand, within A4249_RS12745at 2557.089 kb on + strand, within A4249_RS12745at 2557.090 kb on - strand, within A4249_RS12745at 2557.165 kb on - strand, within A4249_RS12745at 2557.722 kb on + strandat 2557.722 kb on + strandat 2557.722 kb on + strandat 2557.722 kb on + strandat 2557.722 kb on + strandat 2557.723 kb on - strandat 2557.723 kb on - strandat 2557.723 kb on - strandat 2557.946 kb on - strand, within A4249_RS12750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
remove
2,555,912 - -0.3
2,555,966 + -0.1
2,555,967 - +0.9
2,556,596 - A4249_RS12740 0.78 -1.0
2,556,613 + A4249_RS12740 0.80 -0.8
2,556,613 + A4249_RS12740 0.80 +0.2
2,556,613 + A4249_RS12740 0.80 +0.4
2,556,613 + A4249_RS12740 0.80 -1.2
2,556,613 + A4249_RS12740 0.80 -0.0
2,556,614 - A4249_RS12740 0.80 +0.3
2,556,619 + A4249_RS12740 0.80 +0.9
2,556,619 + A4249_RS12740 0.80 +0.5
2,556,619 + A4249_RS12740 0.80 -0.1
2,556,619 + A4249_RS12740 0.80 -0.4
2,556,619 + A4249_RS12740 0.80 -0.6
2,556,619 + A4249_RS12740 0.80 +1.2
2,556,619 + A4249_RS12740 0.80 -0.3
2,556,619 + A4249_RS12740 0.80 -0.2
2,556,619 + A4249_RS12740 0.80 +0.9
2,556,619 + A4249_RS12740 0.80 -0.7
2,556,619 + A4249_RS12740 0.80 -1.6
2,556,620 - A4249_RS12740 0.81 -0.4
2,556,620 - A4249_RS12740 0.81 -0.2
2,556,620 - A4249_RS12740 0.81 -0.2
2,556,620 - A4249_RS12740 0.81 -0.3
2,556,620 - A4249_RS12740 0.81 +0.2
2,556,620 - A4249_RS12740 0.81 +1.2
2,556,620 - A4249_RS12740 0.81 +0.0
2,556,620 - A4249_RS12740 0.81 +0.4
2,556,620 - A4249_RS12740 0.81 -0.7
2,556,885 + A4249_RS12745 0.13 -0.1
2,556,886 - A4249_RS12745 0.13 +0.2
2,556,960 + A4249_RS12745 0.22 -0.1
2,556,960 + A4249_RS12745 0.22 +0.8
2,556,960 + A4249_RS12745 0.22 +0.4
2,556,960 + A4249_RS12745 0.22 -0.3
2,556,960 + A4249_RS12745 0.22 -0.2
2,556,960 + A4249_RS12745 0.22 -0.3
2,556,961 - A4249_RS12745 0.23 -0.0
2,556,979 - A4249_RS12745 0.25 +1.1
2,556,995 + A4249_RS12745 0.27 +0.5
2,556,996 - A4249_RS12745 0.27 -0.7
2,556,996 - A4249_RS12745 0.27 +0.5
2,557,050 + A4249_RS12745 0.34 -1.5
2,557,050 + A4249_RS12745 0.34 +0.2
2,557,051 - A4249_RS12745 0.34 -1.1
2,557,051 - A4249_RS12745 0.34 -2.2
2,557,051 - A4249_RS12745 0.34 +0.1
2,557,051 - A4249_RS12745 0.34 -0.2
2,557,089 + A4249_RS12745 0.39 +0.2
2,557,089 + A4249_RS12745 0.39 +0.3
2,557,089 + A4249_RS12745 0.39 +0.7
2,557,090 - A4249_RS12745 0.39 -0.3
2,557,165 - A4249_RS12745 0.49 -0.7
2,557,722 + +0.4
2,557,722 + -0.3
2,557,722 + -0.0
2,557,722 + +0.7
2,557,722 + -0.9
2,557,723 - +0.4
2,557,723 - -0.4
2,557,723 - +1.0
2,557,946 - A4249_RS12750 0.14 -0.1

Or see this region's nucleotide sequence