Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12385 and A4249_RS12390 are separated by 164 nucleotides A4249_RS12390 and A4249_RS12395 are separated by 13 nucleotides A4249_RS12395 and A4249_RS12400 overlap by 1 nucleotides A4249_RS12400 and A4249_RS12405 are separated by 152 nucleotides
A4249_RS12385: A4249_RS12385 - BLUF domain-containing protein, at 2,484,327 to 2,484,698
_RS12385
A4249_RS12390: A4249_RS12390 - ATP-dependent protease subunit HslV, at 2,484,863 to 2,485,423
_RS12390
A4249_RS12395: A4249_RS12395 - ATP-dependent Clp protease proteolytic subunit, at 2,485,437 to 2,486,018
_RS12395
A4249_RS12400: A4249_RS12400 - hypothetical protein, at 2,486,018 to 2,486,224
_RS12400
A4249_RS12405: A4249_RS12405 - histidine--tRNA ligase, at 2,486,377 to 2,487,867
_RS12405
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-1
0
1
2 at 2484.503 kb on + strand, within A4249_RS12385 at 2484.777 kb on - strand at 2484.798 kb on - strand at 2484.808 kb on + strand at 2485.101 kb on - strand, within A4249_RS12390 at 2485.160 kb on + strand, within A4249_RS12390 at 2485.161 kb on - strand, within A4249_RS12390 at 2485.161 kb on - strand, within A4249_RS12390 at 2485.250 kb on + strand, within A4249_RS12390 at 2485.250 kb on + strand, within A4249_RS12390 at 2485.250 kb on + strand, within A4249_RS12390 at 2485.251 kb on - strand, within A4249_RS12390 at 2485.251 kb on - strand, within A4249_RS12390 at 2485.283 kb on + strand, within A4249_RS12390 at 2485.283 kb on + strand, within A4249_RS12390 at 2485.283 kb on + strand, within A4249_RS12390 at 2485.283 kb on + strand, within A4249_RS12390 at 2485.283 kb on + strand, within A4249_RS12390 at 2485.284 kb on - strand, within A4249_RS12390 at 2485.284 kb on - strand, within A4249_RS12390 at 2485.284 kb on - strand, within A4249_RS12390 at 2485.284 kb on - strand, within A4249_RS12390 at 2485.382 kb on + strand at 2485.382 kb on + strand at 2485.489 kb on + strand at 2485.489 kb on + strand at 2485.489 kb on + strand at 2485.489 kb on + strand at 2485.490 kb on - strand at 2485.490 kb on - strand at 2485.490 kb on - strand at 2485.490 kb on - strand at 2485.490 kb on - strand at 2485.705 kb on + strand, within A4249_RS12395 at 2485.706 kb on - strand, within A4249_RS12395 at 2485.753 kb on + strand, within A4249_RS12395 at 2485.753 kb on + strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.754 kb on - strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.927 kb on + strand, within A4249_RS12395 at 2485.928 kb on - strand, within A4249_RS12395 at 2485.928 kb on - strand, within A4249_RS12395 at 2485.928 kb on - strand, within A4249_RS12395 at 2485.928 kb on - strand, within A4249_RS12395 at 2485.937 kb on - strand, within A4249_RS12395 at 2485.937 kb on - strand, within A4249_RS12395 at 2485.971 kb on - strand at 2486.058 kb on + strand, within A4249_RS12400 at 2486.320 kb on + strand at 2486.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 2,484,503 + A4249_RS12385 0.47 -1.5 2,484,777 - +0.8 2,484,798 - -0.3 2,484,808 + -0.1 2,485,101 - A4249_RS12390 0.42 -0.8 2,485,160 + A4249_RS12390 0.53 -0.7 2,485,161 - A4249_RS12390 0.53 +0.2 2,485,161 - A4249_RS12390 0.53 -1.6 2,485,250 + A4249_RS12390 0.69 +1.0 2,485,250 + A4249_RS12390 0.69 +2.2 2,485,250 + A4249_RS12390 0.69 +0.6 2,485,251 - A4249_RS12390 0.69 +1.2 2,485,251 - A4249_RS12390 0.69 +0.7 2,485,283 + A4249_RS12390 0.75 +0.2 2,485,283 + A4249_RS12390 0.75 -0.2 2,485,283 + A4249_RS12390 0.75 +0.5 2,485,283 + A4249_RS12390 0.75 +0.4 2,485,283 + A4249_RS12390 0.75 -1.3 2,485,284 - A4249_RS12390 0.75 -0.5 2,485,284 - A4249_RS12390 0.75 -0.8 2,485,284 - A4249_RS12390 0.75 -0.3 2,485,284 - A4249_RS12390 0.75 +0.4 2,485,382 + -1.6 2,485,382 + -0.3 2,485,489 + +0.3 2,485,489 + -0.8 2,485,489 + +1.4 2,485,489 + +0.7 2,485,490 - +0.8 2,485,490 - -0.1 2,485,490 - +1.0 2,485,490 - -0.6 2,485,490 - +1.0 2,485,705 + A4249_RS12395 0.46 -0.5 2,485,706 - A4249_RS12395 0.46 +0.6 2,485,753 + A4249_RS12395 0.54 -0.7 2,485,753 + A4249_RS12395 0.54 -0.5 2,485,754 - A4249_RS12395 0.54 +0.2 2,485,754 - A4249_RS12395 0.54 -0.2 2,485,754 - A4249_RS12395 0.54 -0.2 2,485,754 - A4249_RS12395 0.54 +0.5 2,485,754 - A4249_RS12395 0.54 -0.8 2,485,754 - A4249_RS12395 0.54 -1.2 2,485,927 + A4249_RS12395 0.84 +0.7 2,485,927 + A4249_RS12395 0.84 +0.2 2,485,927 + A4249_RS12395 0.84 -0.1 2,485,927 + A4249_RS12395 0.84 -0.6 2,485,927 + A4249_RS12395 0.84 -0.2 2,485,927 + A4249_RS12395 0.84 -0.4 2,485,928 - A4249_RS12395 0.84 +0.1 2,485,928 - A4249_RS12395 0.84 +0.1 2,485,928 - A4249_RS12395 0.84 -0.8 2,485,928 - A4249_RS12395 0.84 -0.2 2,485,937 - A4249_RS12395 0.86 -0.5 2,485,937 - A4249_RS12395 0.86 -0.6 2,485,971 - -0.5 2,486,058 + A4249_RS12400 0.19 -0.4 2,486,320 + +0.6 2,486,321 - -0.2
Or see this region's nucleotide sequence