Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11645

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11635 and A4249_RS11640 are separated by 10 nucleotidesA4249_RS11640 and A4249_RS11645 are separated by 386 nucleotidesA4249_RS11645 and A4249_RS11650 are separated by 77 nucleotidesA4249_RS11650 and A4249_RS16355 are separated by 12 nucleotidesA4249_RS16355 and A4249_RS11660 are separated by 153 nucleotides A4249_RS11635: A4249_RS11635 - IS3 family transposase, at 2,337,461 to 2,338,650 _RS11635 A4249_RS11640: A4249_RS11640 - hypothetical protein, at 2,338,661 to 2,338,867 _RS11640 A4249_RS11645: A4249_RS11645 - helix-turn-helix domain-containing protein, at 2,339,254 to 2,339,661 _RS11645 A4249_RS11650: A4249_RS11650 - mercuric transporter MerT family protein, at 2,339,739 to 2,340,134 _RS11650 A4249_RS16355: A4249_RS16355 - cation transporter, at 2,340,147 to 2,340,476 _RS16355 A4249_RS11660: A4249_RS11660 - mercury resistance system transport protein MerF, at 2,340,630 to 2,340,872 _RS11660 Position (kb) 2339 2340Strain fitness (log2 ratio) -2 -1 0 1at 2338.626 kb on + strandat 2338.626 kb on + strandat 2338.785 kb on + strand, within A4249_RS11640at 2338.785 kb on + strand, within A4249_RS11640at 2338.785 kb on + strand, within A4249_RS11640at 2338.785 kb on + strand, within A4249_RS11640at 2338.785 kb on + strand, within A4249_RS11640at 2338.785 kb on + strand, within A4249_RS11640at 2338.786 kb on - strand, within A4249_RS11640at 2338.786 kb on - strand, within A4249_RS11640at 2338.786 kb on - strand, within A4249_RS11640at 2338.836 kb on + strand, within A4249_RS11640at 2338.871 kb on + strandat 2338.872 kb on - strandat 2338.882 kb on + strandat 2338.882 kb on + strandat 2338.882 kb on + strandat 2338.882 kb on + strandat 2338.883 kb on - strandat 2338.883 kb on - strandat 2338.889 kb on + strandat 2338.889 kb on + strandat 2338.890 kb on - strandat 2338.983 kb on + strandat 2338.984 kb on - strandat 2339.019 kb on - strandat 2339.019 kb on - strandat 2339.019 kb on - strandat 2339.116 kb on - strandat 2339.138 kb on + strandat 2339.138 kb on + strandat 2339.138 kb on + strandat 2339.138 kb on + strandat 2339.139 kb on - strandat 2339.139 kb on - strandat 2339.139 kb on - strandat 2339.139 kb on - strandat 2339.139 kb on - strandat 2339.195 kb on + strandat 2339.195 kb on + strandat 2339.195 kb on + strandat 2339.196 kb on - strandat 2339.196 kb on - strandat 2339.196 kb on - strandat 2339.196 kb on - strandat 2339.201 kb on + strandat 2339.201 kb on + strandat 2339.201 kb on + strandat 2339.201 kb on + strandat 2339.201 kb on + strandat 2339.201 kb on + strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.202 kb on - strandat 2339.232 kb on + strandat 2339.232 kb on + strandat 2339.232 kb on + strandat 2339.233 kb on - strandat 2339.233 kb on - strandat 2339.265 kb on + strandat 2339.265 kb on + strandat 2339.265 kb on + strandat 2339.265 kb on + strandat 2339.266 kb on - strandat 2339.266 kb on - strandat 2339.266 kb on - strandat 2339.528 kb on + strand, within A4249_RS11645at 2339.528 kb on + strand, within A4249_RS11645at 2339.529 kb on - strand, within A4249_RS11645at 2339.529 kb on - strand, within A4249_RS11645at 2339.585 kb on + strand, within A4249_RS11645at 2339.585 kb on + strand, within A4249_RS11645at 2339.586 kb on - strand, within A4249_RS11645at 2339.588 kb on + strand, within A4249_RS11645at 2339.589 kb on - strand, within A4249_RS11645at 2339.589 kb on - strand, within A4249_RS11645at 2339.682 kb on + strandat 2339.690 kb on - strandat 2339.698 kb on + strandat 2339.698 kb on + strandat 2339.699 kb on - strandat 2339.699 kb on - strandat 2339.734 kb on + strandat 2339.735 kb on - strandat 2339.735 kb on - strandat 2339.937 kb on + strand, within A4249_RS11650at 2339.937 kb on + strand, within A4249_RS11650at 2339.937 kb on + strand, within A4249_RS11650at 2339.937 kb on + strand, within A4249_RS11650at 2339.937 kb on + strand, within A4249_RS11650at 2339.938 kb on - strand, within A4249_RS11650at 2339.938 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2339.989 kb on - strand, within A4249_RS11650at 2340.024 kb on + strand, within A4249_RS11650at 2340.025 kb on - strand, within A4249_RS11650at 2340.124 kb on - strandat 2340.130 kb on - strandat 2340.393 kb on + strand, within A4249_RS16355at 2340.393 kb on + strand, within A4249_RS16355at 2340.393 kb on + strand, within A4249_RS16355at 2340.393 kb on + strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.394 kb on - strand, within A4249_RS16355at 2340.466 kb on + strandat 2340.466 kb on + strandat 2340.466 kb on + strandat 2340.467 kb on - strandat 2340.467 kb on - strandat 2340.467 kb on - strandat 2340.467 kb on - strandat 2340.474 kb on + strandat 2340.474 kb on + strandat 2340.475 kb on - strandat 2340.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,338,626 + +0.7
2,338,626 + +0.2
2,338,785 + A4249_RS11640 0.60 -0.4
2,338,785 + A4249_RS11640 0.60 +0.5
2,338,785 + A4249_RS11640 0.60 -0.1
2,338,785 + A4249_RS11640 0.60 +0.0
2,338,785 + A4249_RS11640 0.60 +1.0
2,338,785 + A4249_RS11640 0.60 -1.0
2,338,786 - A4249_RS11640 0.60 -1.1
2,338,786 - A4249_RS11640 0.60 -0.9
2,338,786 - A4249_RS11640 0.60 +0.0
2,338,836 + A4249_RS11640 0.85 +1.0
2,338,871 + +0.7
2,338,872 - -0.6
2,338,882 + +0.6
2,338,882 + -2.2
2,338,882 + -0.2
2,338,882 + -0.2
2,338,883 - +0.6
2,338,883 - -0.4
2,338,889 + -0.2
2,338,889 + +0.2
2,338,890 - +0.5
2,338,983 + -1.4
2,338,984 - -1.1
2,339,019 - -0.4
2,339,019 - +0.6
2,339,019 - -0.6
2,339,116 - -0.2
2,339,138 + -0.2
2,339,138 + +0.0
2,339,138 + -1.4
2,339,138 + +0.3
2,339,139 - +0.5
2,339,139 - -1.9
2,339,139 - +0.4
2,339,139 - -1.0
2,339,139 - -1.6
2,339,195 + -0.7
2,339,195 + -0.0
2,339,195 + -0.5
2,339,196 - +0.1
2,339,196 - +0.2
2,339,196 - +0.6
2,339,196 - -0.5
2,339,201 + -0.6
2,339,201 + -1.6
2,339,201 + +0.7
2,339,201 + +0.2
2,339,201 + +0.2
2,339,201 + +0.3
2,339,202 - -0.5
2,339,202 - +0.2
2,339,202 - -1.2
2,339,202 - -0.3
2,339,202 - +0.2
2,339,202 - +0.9
2,339,202 - -0.1
2,339,232 + +0.5
2,339,232 + -0.2
2,339,232 + -1.2
2,339,233 - -1.8
2,339,233 - -0.2
2,339,265 + -0.1
2,339,265 + +0.6
2,339,265 + -0.1
2,339,265 + -0.4
2,339,266 - -0.1
2,339,266 - +0.4
2,339,266 - -0.4
2,339,528 + A4249_RS11645 0.67 -0.0
2,339,528 + A4249_RS11645 0.67 -0.1
2,339,529 - A4249_RS11645 0.67 -0.4
2,339,529 - A4249_RS11645 0.67 +0.0
2,339,585 + A4249_RS11645 0.81 -0.9
2,339,585 + A4249_RS11645 0.81 +0.3
2,339,586 - A4249_RS11645 0.81 -0.9
2,339,588 + A4249_RS11645 0.82 -0.6
2,339,589 - A4249_RS11645 0.82 +0.1
2,339,589 - A4249_RS11645 0.82 -0.2
2,339,682 + -0.5
2,339,690 - -0.3
2,339,698 + -0.5
2,339,698 + -0.2
2,339,699 - -0.1
2,339,699 - +0.0
2,339,734 + +0.7
2,339,735 - +0.1
2,339,735 - -0.2
2,339,937 + A4249_RS11650 0.50 +1.0
2,339,937 + A4249_RS11650 0.50 -0.3
2,339,937 + A4249_RS11650 0.50 -0.4
2,339,937 + A4249_RS11650 0.50 -0.7
2,339,937 + A4249_RS11650 0.50 +0.0
2,339,938 - A4249_RS11650 0.50 +0.2
2,339,938 - A4249_RS11650 0.50 -0.0
2,339,989 - A4249_RS11650 0.63 -0.4
2,339,989 - A4249_RS11650 0.63 -0.0
2,339,989 - A4249_RS11650 0.63 +0.2
2,339,989 - A4249_RS11650 0.63 -0.5
2,339,989 - A4249_RS11650 0.63 -0.4
2,339,989 - A4249_RS11650 0.63 -0.3
2,340,024 + A4249_RS11650 0.72 -0.7
2,340,025 - A4249_RS11650 0.72 +0.8
2,340,124 - -0.6
2,340,130 - +0.5
2,340,393 + A4249_RS16355 0.75 +1.1
2,340,393 + A4249_RS16355 0.75 -0.7
2,340,393 + A4249_RS16355 0.75 -0.6
2,340,393 + A4249_RS16355 0.75 -0.2
2,340,394 - A4249_RS16355 0.75 +1.3
2,340,394 - A4249_RS16355 0.75 -0.1
2,340,394 - A4249_RS16355 0.75 +0.9
2,340,394 - A4249_RS16355 0.75 +0.5
2,340,394 - A4249_RS16355 0.75 -0.0
2,340,394 - A4249_RS16355 0.75 +0.3
2,340,466 + +0.9
2,340,466 + -0.8
2,340,466 + -1.2
2,340,467 - +0.6
2,340,467 - -0.4
2,340,467 - +0.1
2,340,467 - +0.4
2,340,474 + -0.0
2,340,474 + -1.1
2,340,475 - +0.3
2,340,475 - -0.7

Or see this region's nucleotide sequence