Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10275

Experiment: Xanthine 0.6574 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS10270 and A4249_RS10275 overlap by 4 nucleotidesA4249_RS10275 and A4249_RS10280 are separated by 84 nucleotidesA4249_RS10280 and A4249_RS10285 overlap by 4 nucleotides A4249_RS10270: A4249_RS10270 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 2,062,264 to 2,063,559 _RS10270 A4249_RS10275: A4249_RS10275 - Lrp/AsnC family transcriptional regulator, at 2,063,556 to 2,064,038 _RS10275 A4249_RS10280: A4249_RS10280 - DMT family transporter, at 2,064,123 to 2,065,031 _RS10280 A4249_RS10285: A4249_RS10285 - methyl-accepting chemotaxis protein, at 2,065,028 to 2,066,521 _RS10285 Position (kb) 2063 2064 2065Strain fitness (log2 ratio) -2 -1 0 1at 2062.685 kb on - strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.977 kb on - strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.660 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.710 kb on + strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2064.002 kb on + strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.040 kb on - strandat 2064.107 kb on - strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.118 kb on - strandat 2064.184 kb on - strandat 2064.204 kb on - strandat 2064.279 kb on + strand, within A4249_RS10280at 2064.372 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.630 kb on + strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.631 kb on - strand, within A4249_RS10280at 2064.810 kb on + strand, within A4249_RS10280at 2064.810 kb on + strand, within A4249_RS10280at 2064.810 kb on + strand, within A4249_RS10280at 2064.810 kb on + strand, within A4249_RS10280at 2065.029 kb on + strandat 2065.030 kb on - strandat 2065.030 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
remove
2,062,685 - A4249_RS10270 0.32 +0.3
2,062,976 + A4249_RS10270 0.55 -0.1
2,062,976 + A4249_RS10270 0.55 +0.3
2,062,977 - A4249_RS10270 0.55 +0.2
2,063,320 + A4249_RS10270 0.81 -0.4
2,063,320 + A4249_RS10270 0.81 +0.1
2,063,320 + A4249_RS10270 0.81 +0.1
2,063,320 + A4249_RS10270 0.81 +0.1
2,063,321 - A4249_RS10270 0.82 -0.3
2,063,321 - A4249_RS10270 0.82 +0.2
2,063,321 - A4249_RS10270 0.82 +0.0
2,063,321 - A4249_RS10270 0.82 +0.1
2,063,557 + +0.1
2,063,557 + -0.1
2,063,557 + -1.2
2,063,557 + -0.2
2,063,558 - +0.3
2,063,558 - -0.5
2,063,558 - -0.0
2,063,558 - +0.5
2,063,660 + A4249_RS10275 0.22 -0.9
2,063,674 + A4249_RS10275 0.24 -0.8
2,063,674 + A4249_RS10275 0.24 +0.3
2,063,674 + A4249_RS10275 0.24 +0.1
2,063,674 + A4249_RS10275 0.24 +0.9
2,063,674 + A4249_RS10275 0.24 +0.2
2,063,674 + A4249_RS10275 0.24 +0.0
2,063,675 - A4249_RS10275 0.25 -1.0
2,063,675 - A4249_RS10275 0.25 +0.5
2,063,675 - A4249_RS10275 0.25 +0.2
2,063,675 - A4249_RS10275 0.25 -2.0
2,063,675 - A4249_RS10275 0.25 +0.0
2,063,675 - A4249_RS10275 0.25 -0.5
2,063,710 + A4249_RS10275 0.32 -1.0
2,063,711 - A4249_RS10275 0.32 +0.3
2,063,711 - A4249_RS10275 0.32 +1.1
2,063,711 - A4249_RS10275 0.32 -0.5
2,064,002 + -1.4
2,064,003 - -0.1
2,064,003 - +0.0
2,064,003 - -0.4
2,064,003 - -0.5
2,064,040 - -0.7
2,064,107 - -0.5
2,064,111 + +0.1
2,064,111 + -1.0
2,064,111 + +0.2
2,064,111 + -0.0
2,064,111 + -0.4
2,064,112 - -0.8
2,064,112 - -0.4
2,064,112 - +1.6
2,064,112 - -0.1
2,064,112 - -1.4
2,064,118 - +0.2
2,064,184 - +0.4
2,064,204 - +0.8
2,064,279 + A4249_RS10280 0.17 -0.3
2,064,372 + A4249_RS10280 0.27 +1.1
2,064,408 + A4249_RS10280 0.31 +0.8
2,064,408 + A4249_RS10280 0.31 +0.7
2,064,408 + A4249_RS10280 0.31 -0.5
2,064,408 + A4249_RS10280 0.31 -0.2
2,064,409 - A4249_RS10280 0.31 -0.6
2,064,409 - A4249_RS10280 0.31 -0.4
2,064,409 - A4249_RS10280 0.31 -0.1
2,064,409 - A4249_RS10280 0.31 -0.0
2,064,409 - A4249_RS10280 0.31 -0.8
2,064,630 + A4249_RS10280 0.56 +0.1
2,064,630 + A4249_RS10280 0.56 +0.5
2,064,630 + A4249_RS10280 0.56 -0.4
2,064,630 + A4249_RS10280 0.56 +0.6
2,064,630 + A4249_RS10280 0.56 +0.7
2,064,630 + A4249_RS10280 0.56 -0.2
2,064,630 + A4249_RS10280 0.56 -1.0
2,064,630 + A4249_RS10280 0.56 +0.8
2,064,630 + A4249_RS10280 0.56 +1.2
2,064,630 + A4249_RS10280 0.56 -0.5
2,064,631 - A4249_RS10280 0.56 +0.2
2,064,631 - A4249_RS10280 0.56 +0.3
2,064,631 - A4249_RS10280 0.56 -0.1
2,064,631 - A4249_RS10280 0.56 +0.5
2,064,631 - A4249_RS10280 0.56 +1.0
2,064,631 - A4249_RS10280 0.56 -1.3
2,064,810 + A4249_RS10280 0.76 -0.2
2,064,810 + A4249_RS10280 0.76 +0.1
2,064,810 + A4249_RS10280 0.76 +0.6
2,064,810 + A4249_RS10280 0.76 -0.8
2,065,029 + -0.2
2,065,030 - +0.1
2,065,030 - -0.4

Or see this region's nucleotide sequence