Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09245

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09240 and A4249_RS09245 overlap by 16 nucleotidesA4249_RS09245 and A4249_RS09250 are separated by 114 nucleotidesA4249_RS09250 and A4249_RS09255 are separated by 3 nucleotides A4249_RS09235: A4249_RS09235 - 3-deoxy-D-manno-octulosonic acid transferase, at 1,847,763 to 1,849,055 _RS09235 A4249_RS09240: A4249_RS09240 - tetraacyldisaccharide 4'-kinase, at 1,849,052 to 1,850,068 _RS09240 A4249_RS09245: A4249_RS09245 - amidohydrolase family protein, at 1,850,053 to 1,851,378 _RS09245 A4249_RS09250: A4249_RS09250 - murein L,D-transpeptidase catalytic domain family protein, at 1,851,493 to 1,852,185 _RS09250 A4249_RS09255: A4249_RS09255 - phosphoribosylamine--glycine ligase, at 1,852,189 to 1,853,463 _RS09255 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -2 -1 0 1 2at 1850.066 kb on + strandat 1850.066 kb on + strandat 1850.067 kb on - strandat 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.525 kb on + strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.526 kb on - strand, within A4249_RS09245at 1850.971 kb on - strand, within A4249_RS09245at 1850.971 kb on - strand, within A4249_RS09245at 1850.999 kb on + strand, within A4249_RS09245at 1851.000 kb on - strand, within A4249_RS09245at 1851.000 kb on - strand, within A4249_RS09245at 1851.214 kb on - strand, within A4249_RS09245at 1851.276 kb on + strandat 1851.276 kb on + strandat 1851.332 kb on - strandat 1851.382 kb on + strandat 1851.382 kb on + strandat 1851.516 kb on + strandat 1851.516 kb on + strandat 1851.516 kb on + strandat 1851.516 kb on + strandat 1851.516 kb on + strandat 1851.516 kb on + strandat 1851.517 kb on - strandat 1851.757 kb on + strand, within A4249_RS09250at 1851.757 kb on + strand, within A4249_RS09250at 1851.757 kb on + strand, within A4249_RS09250at 1851.757 kb on + strand, within A4249_RS09250at 1851.799 kb on + strand, within A4249_RS09250at 1851.799 kb on + strand, within A4249_RS09250at 1851.800 kb on - strand, within A4249_RS09250at 1851.935 kb on - strand, within A4249_RS09250at 1851.935 kb on - strand, within A4249_RS09250at 1851.935 kb on - strand, within A4249_RS09250at 1851.980 kb on + strand, within A4249_RS09250at 1851.980 kb on + strand, within A4249_RS09250at 1851.981 kb on - strand, within A4249_RS09250at 1851.981 kb on - strand, within A4249_RS09250at 1852.000 kb on + strand, within A4249_RS09250at 1852.000 kb on + strand, within A4249_RS09250at 1852.001 kb on - strand, within A4249_RS09250at 1852.005 kb on + strand, within A4249_RS09250at 1852.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,850,066 + -0.1
1,850,066 + -0.1
1,850,067 - +0.1
1,850,525 + A4249_RS09245 0.36 -1.8
1,850,525 + A4249_RS09245 0.36 +0.1
1,850,525 + A4249_RS09245 0.36 -0.3
1,850,525 + A4249_RS09245 0.36 +0.4
1,850,525 + A4249_RS09245 0.36 +0.5
1,850,525 + A4249_RS09245 0.36 -1.0
1,850,525 + A4249_RS09245 0.36 +0.6
1,850,525 + A4249_RS09245 0.36 +0.2
1,850,525 + A4249_RS09245 0.36 -0.2
1,850,526 - A4249_RS09245 0.36 +1.0
1,850,526 - A4249_RS09245 0.36 +0.2
1,850,526 - A4249_RS09245 0.36 -0.2
1,850,526 - A4249_RS09245 0.36 +0.7
1,850,526 - A4249_RS09245 0.36 -0.5
1,850,526 - A4249_RS09245 0.36 -0.9
1,850,526 - A4249_RS09245 0.36 +0.4
1,850,971 - A4249_RS09245 0.69 -0.3
1,850,971 - A4249_RS09245 0.69 +0.0
1,850,999 + A4249_RS09245 0.71 +0.9
1,851,000 - A4249_RS09245 0.71 -0.2
1,851,000 - A4249_RS09245 0.71 +0.1
1,851,214 - A4249_RS09245 0.88 -0.5
1,851,276 + +0.5
1,851,276 + -0.9
1,851,332 - +1.2
1,851,382 + -0.2
1,851,382 + -0.4
1,851,516 + +0.3
1,851,516 + +2.5
1,851,516 + -0.4
1,851,516 + +1.6
1,851,516 + -0.6
1,851,516 + +1.5
1,851,517 - +0.4
1,851,757 + A4249_RS09250 0.38 -0.1
1,851,757 + A4249_RS09250 0.38 -1.2
1,851,757 + A4249_RS09250 0.38 +0.4
1,851,757 + A4249_RS09250 0.38 +0.8
1,851,799 + A4249_RS09250 0.44 +1.0
1,851,799 + A4249_RS09250 0.44 -0.5
1,851,800 - A4249_RS09250 0.44 -0.3
1,851,935 - A4249_RS09250 0.64 +0.6
1,851,935 - A4249_RS09250 0.64 +1.2
1,851,935 - A4249_RS09250 0.64 +0.8
1,851,980 + A4249_RS09250 0.70 +0.2
1,851,980 + A4249_RS09250 0.70 +0.2
1,851,981 - A4249_RS09250 0.70 +0.2
1,851,981 - A4249_RS09250 0.70 +0.8
1,852,000 + A4249_RS09250 0.73 +0.4
1,852,000 + A4249_RS09250 0.73 +0.0
1,852,001 - A4249_RS09250 0.73 -1.0
1,852,005 + A4249_RS09250 0.74 +0.2
1,852,183 + -1.8

Or see this region's nucleotide sequence