Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS05505 and A4249_RS05510 overlap by 4 nucleotides A4249_RS05510 and A4249_RS05515 are separated by 50 nucleotides A4249_RS05515 and A4249_RS05520 are separated by 4 nucleotides A4249_RS05520 and A4249_RS05525 overlap by 4 nucleotides
A4249_RS05505: A4249_RS05505 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,123,809 to 1,125,968
_RS05505
A4249_RS05510: A4249_RS05510 - TIGR00730 family Rossman fold protein, at 1,125,965 to 1,126,723
_RS05510
A4249_RS05515: A4249_RS05515 - orotate phosphoribosyltransferase, at 1,126,774 to 1,127,358
_RS05515
A4249_RS05520: A4249_RS05520 - pyridoxine 5'-phosphate synthase, at 1,127,363 to 1,128,103
_RS05520
A4249_RS05525: A4249_RS05525 - holo-ACP synthase, at 1,128,100 to 1,128,501
_RS05525
Position (kb) 1126
1127
1128 Strain fitness (log2 ratio) -2
-1
0
1 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.085 kb on + strand, within A4249_RS05510 at 1126.086 kb on - strand, within A4249_RS05510 at 1126.086 kb on - strand, within A4249_RS05510 at 1126.178 kb on + strand, within A4249_RS05510 at 1126.178 kb on + strand, within A4249_RS05510 at 1126.178 kb on + strand, within A4249_RS05510 at 1126.179 kb on - strand, within A4249_RS05510 at 1126.179 kb on - strand, within A4249_RS05510 at 1126.382 kb on + strand, within A4249_RS05510 at 1126.382 kb on + strand, within A4249_RS05510 at 1126.415 kb on + strand, within A4249_RS05510 at 1126.415 kb on + strand, within A4249_RS05510 at 1126.415 kb on + strand, within A4249_RS05510 at 1126.415 kb on + strand, within A4249_RS05510 at 1126.415 kb on + strand, within A4249_RS05510 at 1126.416 kb on - strand, within A4249_RS05510 at 1126.416 kb on - strand, within A4249_RS05510 at 1126.416 kb on - strand, within A4249_RS05510 at 1126.571 kb on + strand, within A4249_RS05510 at 1126.571 kb on + strand, within A4249_RS05510 at 1126.572 kb on - strand, within A4249_RS05510 at 1126.762 kb on + strand at 1126.762 kb on + strand at 1126.763 kb on - strand at 1127.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 1,126,085 + A4249_RS05510 0.16 +0.8 1,126,085 + A4249_RS05510 0.16 -0.3 1,126,085 + A4249_RS05510 0.16 -0.4 1,126,085 + A4249_RS05510 0.16 -0.9 1,126,085 + A4249_RS05510 0.16 -0.4 1,126,085 + A4249_RS05510 0.16 -0.9 1,126,086 - A4249_RS05510 0.16 -0.1 1,126,086 - A4249_RS05510 0.16 -0.1 1,126,178 + A4249_RS05510 0.28 -0.3 1,126,178 + A4249_RS05510 0.28 -0.1 1,126,178 + A4249_RS05510 0.28 +1.7 1,126,179 - A4249_RS05510 0.28 -1.2 1,126,179 - A4249_RS05510 0.28 +0.7 1,126,382 + A4249_RS05510 0.55 +0.6 1,126,382 + A4249_RS05510 0.55 -1.2 1,126,415 + A4249_RS05510 0.59 +1.1 1,126,415 + A4249_RS05510 0.59 -0.3 1,126,415 + A4249_RS05510 0.59 +0.2 1,126,415 + A4249_RS05510 0.59 +0.0 1,126,415 + A4249_RS05510 0.59 -0.2 1,126,416 - A4249_RS05510 0.59 -0.1 1,126,416 - A4249_RS05510 0.59 +0.5 1,126,416 - A4249_RS05510 0.59 -0.0 1,126,571 + A4249_RS05510 0.80 +0.1 1,126,571 + A4249_RS05510 0.80 +0.4 1,126,572 - A4249_RS05510 0.80 -1.4 1,126,762 + -2.2 1,126,762 + -0.9 1,126,763 - -0.2 1,127,356 + +0.1
Or see this region's nucleotide sequence